Publications RICE

2015

Dufey I., Draye X., Lutts S., Lorieux M., Martinez C.P., Bertin P. Novel QTL in an interspecific backcross Oryza sativa x Oryza glaberrima for resistance to iron toxicity in rice. Euphytica, 2015 , DOI 10.1007/s10681-014-1342-7

Arbelaez, J.D., Moreno L.T. , Singh N., Tung C.W., Maron L.G., Ospina Y., Martinez C.P., Grenier C., Lorieux M., McCouchS.R. Development and GBS-genotyping of Introgression Lines (ILs) using two wild species of rice, O. meridionalis and O. rufipogon,in a common recurrent parent,O. sativa cv. Curinga. Plant Breeding, in press

Duitama J., Silva A., Sanabria Y., Cruz D.F. ,Quintero C., Ballen C., Lorieux M., Scheffler B., Farmer A., Moreno M., Dellaporta S., Torres E., Tohme J., Oard J. Whole genome sequencing of elite rice cultivars reveals recurrent copy number variation, diversity patterns, and variety specific introgression events in Oryza sativa spp. japonica and indica.PLos One, in press

 

2014

El Baidouri M., Carpentier M.C., Cooke R., Gao D., Lasserre E., Llauro C., Mirouze M., Picault N., Jackson S.A., Panaud O. Widespread and frequent horizontal transfers of transposable elements in plants. Genome Research, 2014, 24(5):831-8

Jaligot E., Hooi W.Y., Debladis E., Richaud F., Beulé T., Collin M., Agbessi M.D.T., Sabot F., Gasmeur O., D'Hont A., Alwee S.S.R.S., Rival A. DNA Methylation and Expression of the EgDEF1 Gene and Neighboring Retrotransposons inmantled Somaclonal Variants of Oil Palm. PLoS One, 2014,DOI: 10.1371/journal.pone.0091896

Mariac C., Scarcelli N., Pouzadou J., Barnaud A., Billot C., Faye A., Kougbeadjo A., Maillol V., Martin G., Sabot F., Santoni S., Vigouroux Y., Couvreur T.L.P. Cost-effective enrichment hybridization capture of chloroplast genomes at deep multiplexing levels for population genetics and phylogeography studies. Molecular Ecology Resources, 2014, 14(6): 1103-1113.

Mirouze M., Vitte C. Transposable elements, a treasure trove to decipher epigenetic variation: insights from Arabidopsis and crop epigenomes. Journal of Experimental Botany, 2014, 65 (10), p. 2801-2812. ISSN 0022-0957

Nabholz B., Sarah G., Sabot F., Ruiz M., Adam H., Nidelet S., Ghesquière A., Santoni S., David J., Glemin S. Transcriptome population genomics reveals severe bottleneck and domestication cost in the African rice (Oryza glaberrima). Molecular Ecology, 2014, 23 (9), p. 2210-2227. ISSN 0962-1083

Ogawa S, Gomez Selvaraj M., Joseph Fernando A., Lorieux M., Ishitani M., McCouch S., Arbelaez J.D. N and P mediated seminal root elongation response in rice seedling. Plant and Soil, 2014, 375:303-315

Orjuela J., Sabot F., Chéron S., Vigouroux Y., Adam H., Chrestin H., Sanni K., Lorieux M., Ghesquière A. An extensive analysis of the African rice genetic diversity through a global genotyping. Theoretical and Applied Genetics, 2014, 127 (10), p. 2211-2223. ISSN 0040-5752

Pariasca-Tanaka J., Lorieux M., He C., McCouch S.R., Thomson M. J., Wissuwa M. Development of a SNP genotyping panel for detecting polymorphisms in Oryza glaberrima/O. sativa interspecific crosses. Euphytica, 2014, DOI 10.1007/s10681-014-1183-4

Romero L. E., Lozano I., Garavito A., Carabali S. J., Triana M., Villareal N., Reyes L., Duque M. C., Martinez C. P., Calvert L., Lorieux M. Major QTLs control resistance to Rice Hoja Blanca Virus and its vector Tagosodes orizicolus. G3-Genes Genomes Genetics, 2014, 4 (1), p. 133-142. ISSN 2160-1836

Sabot F. Tos17 rice element : incomplete but effective. Mobile DNA, 2014, 5, p. art. 10. ISSN 1759-8753

 

2013

Al-Tam F., Adam H., dos Anjos A., Lorieux M., Larmande P., Ghesquière A., Jouannic S., Shahbazkia H. R. P-TRAP : a panicle trait phenotyping tool. Bmc Plant Biology, 2013, 13, p. 122. ISSN 1471-2229

Bräutigam K., Vining K.J., Lafon-Placette C., Fossdal C.G., Mirouze M., Marcos J.G., Fluch S., Fraga M.F., Guevara M.Á., Abarca D., Johnsen Ø., Maury S., Strauss S.H., Campbell M., Rohde A., Díaz-Sala C., Cervera M.T. Epigenetic regulation of adaptive responses of forest tree species to the environment. Ecology and Evolution, 3:399-415

Kam H., Laing M. D., Séré Y., Thiémélé D., Ghesquière A., Ahmadi N., Ndjiondjop M. N. Evaluation of a collection of rice landraces from Burkina Faso for resistance or tolerance to Rice yellow mottle virus. Journal of Plant Pathology, 2013, 95 (3), p. 485-492. ISSN 1125-4653

Lorieux M., Garavito A., Bouniol J., Gutierrez A., Ndjiondjop M.N., Guyot R., Pompilio Ma. C., Tohme J., Ghesquière A. Unlocking the Oryza glaberrima treasure for rice breeding in Africa. In : Wopereis M.C.S. (ed.), Johnson D.E. (ed.), Ahmadi N. (ed.), Tollens E. (ed.), Jalloh A. (ed.).Realizing Africa's rice promise. Wallingford : CABI, 2013, p. 130-143. Realizing Africa's Rice Promise, 3., 2013/10, Yaoundé

Ndjiondjop M.N., Albar L., Sow M., Yao N., Djedatin G., Thiemelé D., Ghesquière A.. Integration of molecular markers in rice improvement : a case study on resistance to Rice Yellow Mottle Virus. In : Wopereis M.C.S. (ed.), Johnson D.E. (ed.), Ahmadi N. (ed.), Tollens E. (ed.), Jalloh A. (ed.) Realizing Africa's rice promise. Wallingford : CABI, 2013, p. 161-172. Realizing Africa's Rice Promise, 3., Yaoundé (CMR), 2013/10.

Orjuela J., Deless E. , Kolade O., Chéron S., Ghesquière A., Albar L. A recessive resistance to Rice yellow mottle virus is associated with a rice homolog of the CPR5 gene, a regulator of active defense mechanisms. Molecular Plant-Microbe Interactions, 2013, 26 (12), p. 1455-1463. ISSN 0894-0282

Reinders J., Mirouze M., Nicolet J., Paszkowski J. Parent-of-origin control of transgenerational retrotransposon proliferation in Arabidopsis. EMBO Reports, 14(9):823-8

Spindel J., Wright M., Chen C., Cobb J., Gage J., Harrington S., Lorieux M., Ahmadi N., McCouch S. Bridging the genotyping gap : using genotyping by sequencing (GBS) to add high-density SNP markers and new value to traditional bi-parental mapping and breeding populations. Theoretical and Applied Genetics, 2013, 126 (11), p. 2699-2716. ISSN 0040-5752

Wollbrett J., Larmande P., de Lamotte F., Ruiz M. Clever generation of rich SPARQL queries from annotated relational schema : application to Semantic Web Service creation for biological databases.Bmc Bioinformatics, 2013, 14, p. 126. ISSN 1471-2105