Publications ADvENS copy spt 2016

2016

Guerin C, Joët T, Serret J, Lashermes P, Vaissayre V, Agbessi MD, Beulé T, Severac D, Amblard P, Tregear J, Durand-Gasselin T, Morcillo F, Dussert S., 2016. Gene
coexpression network analysis of oil biosynthesis in an interspecific backcross of oil palm. Plant Journal 87(5):423-41. doi: 10.1111/tpj.13208

Joët T, Ourcival JM, Capelli M, Dussert S, Morin X. 2016. Explanatory ecological factors for the persistence of desiccation-sensitive seeds in transient soil seed banks: Quercus ilex as a case study. Ann Bot. 117(1):165-76. doi: 10.1093/aob/mcv139.

Lashermes P, Hueber Y, Combes M.C, Severac D, Dereeper A, 2016. Inter-genomic DNA exchanges and homeologous gene silencing shaped the nascent allopolyploid coffee genome (Coffea arabica L.). G3 (Bethesda) 6(9):2937-48. doi: 10.1534/g3.116.030858

 

2015

Beulé T, Agbessi MD, Dussert S, Jaligot E, Guyot R. 2015. Genome-wide analysis of LTR-retrotransposons in oil palm. BMC Genomics. 16(1):795. doi: 10.1186/s12864-015-2023-1.

Bertrand B, Bardil A, Baraille H, Dussert S, Doulbeau S, Dubois E, Severac D, Dereeper A, Etienne H. 2015. The Greater Phenotypic Homeostasis of the Allopolyploid Coffea arabica Improved the Transcriptional Homeostasis Over that of Both Diploid Parents. Plant Cell Physiol. 56(10):2035-51. doi: 10.1093/pcp/pcv117.

Combes MC, Hueber Y, Dereeper A, Rialle S, Herrera JC, Lashermes P., 2015. Regulatory Divergence between Parental Alleles Determines Gene Expression Patterns in Hybrids. Genome Biol Evol. Mar 29;7(4):1110-21. doi: 10.1093/gbe/evv057. PubMed PMID: 25819221; PubMed Central PMCID: PMC4419803. 

Dereeper A, Bocs S, Rouard M, Guignon V, Ravel S, Tranchant-Dubreuil C, Poncet V, Garsmeur O, Lashermes P, Droc G.. 2015. The coffee genome hub: a resource for coffee genomes. Nucleic Acids Res. 43:D1028-35. doi:10.1093/nar/gku1108.

Errouane K, Doulbeau S, Vaissayre V, Leblanc O, Collin M, Kaid-Harche M, Dussert S. 2015. The embryo and the endosperm contribute equally to argan seed oil yield but confer distinct lipid features to argan oil. Food Chemistry. 181: 270–276.   En savoir plus >>>

Fourcade F, Pouteau R, Jaffré T, Marmey P. 2015. In situ observations of the basal angiosperm Amborella trichopoda reveal a long fruiting cycle overlapping two annual flowering periods. J Plant Res. 128(5):821-8. doi:10.1007/s10265-015-0744-5.

 
 

2014

Adler S,Verdeil JL, Lartaud M, Fock-Bastide I, Joët T, Conéjéro G, Noirot M. 2014. Morphological and histological impacts of the laurina mutation on fructification and seed characteristics in Coffea arabica L. Trees. 28 (2) :585-595. doi: 10.1007/s00468-013-0974-x.

Denoeud F, Carretero-Paulet L, Dereeper A, Droc G, Guyot R, Pietrella M, Zheng C, Alberti A, Anthony F, Aprea G, Aury JM, Bento P, Bernard M, Bocs S, Campa C, Cenci A, Combes MC, Crouzillat D, Da Silva C, Daddiego L, De Bellis F, Dussert S, Garsmeur O, Gayraud T, Guignon V, Jahn K, Jamilloux V, Joët T, Labadie K, Lan T, Leclercq J, Lepelley M, Leroy T, Li LT, Librado P, Lopez L, Muñoz A, Noel B, Pallavicini A, Perrotta G, Poncet V, Pot D, Priyono, Rigoreau M, Rouard M, Rozas J, Tranchant-Dubreuil C, VanBuren R, Zhang Q, Andrade AC, Argout X, Bertrand B, de Kochko A, Graziosi G, Henry RJ, Jayarama, Ming R, Nagai C, Rounsley S, Sankoff D, Giuliano G, Albert VA, Wincker P, Lashermes P. 2014. The coffee genome provides insight into the convergent evolution of caffeine biosynthesis. Science. 345:1181-4. doi: 10.1126/science.1255274.

Fock-Bastide I, Palama TL, Bory S, Lécolier A, Noirot M, Joët T. 2014. Expression profiles of key phenylpropanoid genes during Vanilla planifolia pod development reveal a positive correlation between PAL gene expression and vanillin biosynthesis. Plant Physiology and Biochemistry. 74:304-14. doi: 10.1016/j.plaphy.2013.11.026.

Joët T, Laffargue A, Salmona J, Doulbeau S, Descroix F, Bertrand B, Lashermes P, Dussert S. 2014. Regulation of galactomannan biosynthesis in coffee seeds. Journal of Experimental Botany. 65 (1) :323-37. doi: 10.1093/jxb/ert380.

Lashermes P, Combes MC, Hueber Y, Severac D, Dereeper A. 2014. Genome rearrangements derived from homoeologous recombination following allopolyploidy speciation in coffee. Plant Journal. 78 (4) :674-85. doi: 10.1111/tpj.12505.

Romero G., Vásquez LM, Lashermes P, Herrera JC. 2014. Identification of a major QTL for adult plant resistance to coffee leaf rust (Hemileia vastatrix) in the natural Timor hybrid (Coffea arabica x C. canephora). Plant Breeding. 133:121-129. doi: 10.1111/pbr.12127.

 

2013

Cenci A, Combes MC, Lashermes P. 2013. Differences in evolution rates among eudicotyledon species observed by analysis of protein divergence. Journal of Heredity. 104 (4) :459-64. doi: 10.1093/jhered/est025.

Combes MC, Dereeper A, Severac D, Bertrand B, Lashermes P. 2013. Contribution of subgenomes to the transcriptome and their intertwined regulation in the allopolyploid Coffea arabica grown at contrasted temperatures. New Phytologist. 200 (1) :251-60. doi: 10.1111/nph.12371.

Dereeper A, Guyot R, Tranchant-Dubreuil C, Anthony F, Argout X, de Bellis F, Combes MC, Gavory F, de Kochko A, Kudrna D, Leroy T, Poulain J, Rondeau M, Song X, Wing R, Lashermes P. 2013. BAC-end sequences analysis provides first insights into coffee (Coffea canephora P.) genome composition and evolution. Plant Molecular Biology. 83 (3) :177-89. doi: 10.1007/s11103-013-0077-5.

Dussert S, Guerin C, Andersson M, Joët T, Tranbarger TJ, Pizot M, Sarah G, Omore A, Durand-Gasselin T, Morcillo F. 2013. Comparative transcriptome analysis of three oil palm fruit and seed tissues that differ in oil content and fatty acid composition. Plant Physiology. 162  (3) :1337-58. doi: 10.1104/pp.113.220525. 

Joët T, Ourcival JM, Dussert S. 2013. Ecological significance of seed desiccation sensitivity in Quercus ilex. Annals of Botany. 111 (4):693-701. doi: 10.1093/aob/mct025.
 
Peralta M, Combes MC, Cenci A, Lashermes P, Dereeper A. 2013. SNiPloid: A Utility to Exploit High-Throughput SNP Data Derived from RNA-Seq in Allopolyploid Species. International Journal of Plant Genomics. 2013:890123. doi: 10.1155/2013/890123.
 
Rival A, Ilbert P, Labeyrie A, Torres E, Doulbeau S, Personne A, Dussert S, Beulé T, Durand-Gasselin T, Tregear JW, Jaligot E. 2013. Variations in genomic DNA methylation during the long-term in vitro proliferation of oil palm embryogenic suspension cultures. Plant Cell Reports. 32 (3):359-68. doi: 10.1007/s00299-012-1369-y.