Publications

2016

Berthouly C., Mariac C., Couderc M., Pouzadoux J., Floc'h J. B., Vigouroux Y., 2016. Genotyping-by-Sequencing SNP identification for crops without a reference genome : using transcriptome based mapping as an alternative strategy. Frontiers in Plant Science, :7, p. art. 777 [11 p.].

Castano F., Marquinez X., Crèvecoeur M., Collin M., Stauffer F. W., Tregear J., 2016. Comparison of floral structure and ontogeny in monoecious and dioecious species of the palm tribe Chamaedoreeae (Arecaceae ; Arecoideae). International Journal of Plant Sciences, 177 (3) : 247-262.

Chabaud M., Gherbi H., Pirolles E., Vaissayre V., Fournier J., Moukouanga D.l, Franche C., Bogusz D., Tisa L. S., Barker D. G., Svistoonoff S., 2016. Chitinase-resistant hydrophilic symbiotic factors secreted by Frankia activate both Ca2+ spiking and NIN gene expression in the actinorhizal plant Casuarina glauca. New Phytologist, 209 (1) : 86-93.

Cherif E., Zehdi-Azouzi S., Crabos A., Castillo K., Chabrillange N., Pintaud J.C., Salhi-Hannachi A., Glemin S., Aberlenc Bertossi F., 2016 Evolution of sex chromosomes prior to speciation in the dioecious Phoenix species. Journal of Evolutionary Biology : 29 (8) 1513-1522

Couvreur T., Niangadouma R. , 2016. New species of Uvariopsis (Annonaceae) and Laccosperma (Arecaceae/Palmae) from Monts de Cristal, Gabon. Phytokeys, 68,:  1-8

Franche C., Normand P., Pawlowski K., Tisa L. S., Bogusz D., 2016. An update on research on Frankia and actinorhizal plants on the occasion of the 18th meeting of the Frankia-actinorhizal plants symbiosis. Symbiosis, 70 (1) : 1-4.

Froussart E., Zhong C. L., Jiang Q. B., Bonneau J., Bogusz D., Franche C., 2016. Biotechnological strategies for studying actinorhizal symbiosis in Casuarinaceae : transgenesis and beyond. Symbiosis, 70 (1) : 101-109

Gros-Balthazard M., Newton C., Ivorra S., Pierre M. H., Pintaud J.C., Terral J. F., 2016. The domestication syndrome in Phoenix dactylifera seeds : toward the identification of wild date palm populations. Plos One, 11 (3), p. e0152394 [21 p.].

Guyot R., Darre T., Dupeyron M., Kochko de Al., Hamon S., Couturon E., Crouzillat D., Rigoreau M., Rakotomalala J. J., Raharimalala N. E., Akaffou S. D., Hamon P., 2016. Partial sequencing reveals the transposable element composition of Coffea genomes and provides evidence for distinct evolutionary stories. Molecular Genetics and Genomics,  291 (5) : 1979-1990

Joët T, Ourcival JM, Capelli M, Dussert S, Morin X. 2016. Explanatory ecological factors for the persistence of desiccation-sensitive seeds in transient soil seed banks: Quercus ilex as a case study. Ann Bot. 117(1):165-76. doi: 10.1093/aob/mcv139.

Lavenus J., Guyomarc'h S., Laplaze L., 2016.. PIN transcriptional regulation shapes root system architecture. Trends in Plant Science, 21 (3): 175-177

Mansour S. R., Abdel-lateif K., Bogusz D., Franche C., 2016. Influence of salt stress on inoculated Casuarina glauca seedlings. Symbiosis, 70 (1) : 129-138

Muraro D., Larrieu A., Lucas M., Chopard J., Byrne H., Godin C., King J., 2016. A multi-scale model of the interplay between cell signalling and hormone transport in specifying the root meristem of Arabidopsis thaliana. Journal of Theoretical Biology, 404 : 182-205

Moraes R. M., Pintaud J.. C., 2016. Attalea blepharopus Mart. (Arecaceae) from Bolivia revisited since Martius. Candollea,  71 (1) : 27-32

Ngom M., Diagne N., Laplaze L., Champion A., Sy M. O., 2016. Symbiotic ability of diverse Frankia strains on Casuarina glauca plants in hydroponic conditions. Symbiosis,  70 (1) : 79-86

Passot S., Gnacko F., Moukouanga D., Lucas M. Guyomarc'h S., Ortega B. M., Atkinson J. A., Belko M. N., Bennett M. J., Gantet P., Wells D. M., Guedon Y., Vigouroux Y., Verdeil J. L., Muller B., Laplaze L., 2016. Characterization of pearl millet root architecture and anatomy reveals three types of lateral roots. Frontiers in Plant Science,  7, p. art. 829 [11p. ]

Pham M. H., Tran X. H., Berthouly C., Tixier-Boichard M., Chen C. F., Lee Y. P., 2016. Monitoring of genetic diversity in Taiwan conserved chickens assessed by pedigree and molecular data. Livestock Science, 184 : 85-91

Phung N. T. P., Mai C. D., Hoang G. T., Truong H. T. M., Lavarenne J., Gonin M., Le Nguyen Khanh, Ha T. T., Do V. N., Gantet P., Courtois B. Genome-wide association mapping for root traits in a panel of rice accessions from Vietnam. BMC Plant Biology, 2016, 16, p. art. 64 [19 p.].

Plasencia A., Soler M., Dupas A., Ladouce N., Silva-Martins G., Martinez Y., Lapierre C., Franche C., Truchet I., Grima-Pettenati J., 2016. Eucalyptus hairy roots, a fast, efficient and versatile tool to explore function and expression of genes involved in wood formation. Plant Biotechnology Journal,14 (6) : 1381-1393

Popova E., Kim H. H., Saxena P. K., Engelmann F., Pritchard H. W., 2016 Frozen beauty : the cryobiotechnology of orchid diversity. Biotechnology Advances, 34 (4) : 380-403

Rey O., Danchin E., Mirouze M., Loot C., Blanchet S., 2016. Adaptation to global change : a transposable element-epigenetics perspective. Trends in Ecology and Evolution,  31 (7) : 514-526

Roncal J., Guyot R., Hamon P., Crouzillat D., Rigoreau M., Konan O. N., Rakotomalala J. J., Nowak M. D., Davis A. P., Kochko de A., 2016. Active transposable elements recover species boundaries and geographic structure in Madagascan coffee species. Molecular Genetics and Genomics,  291 (1) : 155-168.

Scarcelli N., Mariac C., Couvreur T., Faye A., Richard D., Sabot F., Berthouly C., Vigouroux Y., 2016. Intra-individual polymorphism in chloroplasts from NGS data : where does it come from and how to handle it ?. Molecular Ecology Resources, 16 (2) : 434-445.

Selvakesavan R. K., Dhanya N. N., Thushara P., Abraham S. M., Jayaraj R. S. C., Balasubramanian A., Deeparaj B., Sudha S., Sowmiya Rani K. S., Bachpai V. K. W., Ganesh D., Diagne N., Laplaze L., Gherbi H., Svistoonoff S., Hocher V., Franche C., Bogusz D., Nambiar-Veetil M., 2016. Intraspecies variation in sodium partitioning, potassium and proline accumulation under salt stress in Casuarina equisetifolia Forst. Symbiosis, 70 (1) : 117-127

Zehdi-Azouzi S., Cherif E., Guenni K., Ben Abdelkrim A., Bermil A., Rhouma S., Ben Salah M., Santoni S., Pintaud J.C., Aberlenc Bertossi F.,, 2016. Hannachi A. S. Endemic insular and coastal Tunisian date palm genetic diversity. Genetica, 144 (2) : 181-190.

 

2015

Ahmadi N., Audebert A., Bennett M. J., Bishopp A., de Oliveira A. C., Courtois B., Diedhiou A., Dievart A., Gantet P., Ghesquière A., Guiderdoni E., Henry A., Inukai Y., Kochian L., Laplaze L., Lucas M., Luu D. T., Manneh B., Mo X. R., Muthurajan R., Perin C., Price A., Robin S., Sentenac H., Sine B., Uga Y., Very A. A., Wissuwa M., Wu P., Xu J., 2014. The roots of future rice harvests. Rice,  7, p. art. 29 [9 p.].

Baroux C., Autran D., 2015. Chromatin dynamics during cellular differentiation in the female reproductive lineage of flowering plants. Plant Journal, 83 (1):160-176.

Bellafiore S., Jougla C., Chapuis E., Besnard G., Suong M., Vu P. N., De Waele D., Gantet P., Thi X. N., 2015. Intraspecific variability of the facultative meiotic parthenogenetic root-knot nematode (Meloidogyne graminicola) from rice fields in Vietnam. Comptes Rendus Biologies,, 338 (7): 471-483.

Bertrand B., Bardil A., Baraille H., Dussert S., Doulbeau S., Dubois E., Severac D., Dereeper Alexis, Etienne H. , 2015. The greater phenotypic homeostasis of the allopolyploid Coffea arabica improved the transcriptional homeostasis over that of both diploid parents. Plant and Cell Physiology, 56 (10): 2035-2051

Beulé T., Agbessi M. D. T., Dussert S., Jaligot E., Guyot R., 2015. Genome-wide analysis of LTR-retrotransposons in oil palm. Bmc Genomics, 16, p. art. 795.

Cejas I., Rivas M., Napoles L., Marrero P., Yabor L., Aragon C., Perez A., Engelmann F., 2015. Martinez-Montero M. E., Lorenzo J. C. Impact of liquid nitrogen exposure on selected biochemical and structural parameters of hydrated Phaseolus vulgaris L. seeds. Cryoletters, , 36 (3):149-157

Champion A., Lucas M., Tromas A., Vaissayre V., Crabos A., Diédhiou I., Prodjinoto H., Moukouanga D., Pirolles E., Cissoko M., Bonneau J., Gherbi H., Franche C., Hocher V., Svistoonoff S. and Laplaze L. 2015. Inhibition of auxin signaling in Frankia-infected cells in Casuarina glauca nodules leads to increased nodulation. Plant Physiology, 167: 1149-1157.

Chaparro C., Gayraud T., de Souza R. F., Domingues D. S., Akaffou S., Vanzela A. L. L., Kochko de Alexandre, Rigoreau M., Crouzillat D., Hamon Serge, Hamon Perla, Guyot Romain, 2015. Terminal-repeat retrotransposons with GAG domain in plant genomes : a new testimony on the complex world of transposable elements. Genome Biology and Evolution, 7 (2), p. 493-504.

Clavijo F, Diedhiou I, Vaissayre V, Brottier L, Acolatse J, Moukouanga D, Crabos A, Auguy F, Franche C, Gherbi HChampion A, Hocher V, Barker D, Bogusz D, Tisa L, Svistoonoff, S. 2015.  The Casuarina NIN gene is transcriptionally activated throughout Frankia root infection as well as in response to bacterial diffusible signals. New Phytologist, 208 (3):  887-903

Combes MC, Hueber Y, Dereeper A, Rialle S, Herrera JC, Lashermes P., 2015. Regulatory Divergence between Parental Alleles Determines Gene Expression Patterns in Hybrids. Genome Biol Evol. Mar 29;7(4):1110-21. doi: 10.1093/gbe/evv057. PubMed PMID: 25819221; PubMed Central PMCID: PMC4419803.

Coomes O. T., McGuire S. J., Garine E., Caillon S., McKey D., Demeulenaere E., Jarvis D., Aistara G., Barnaud A., Clouvel P., Emperaire Laure, Louafi S., Martin P., Massol F., Pautasso M., Violon C., Wencelius J., 2015. Farmer seed networks make a limited contribution to agriculture ? Four common misconceptions. Food Policy , 56 : 41-50.

Cordeiro L. D., Simoes-Gurgel C., Albarello N., Engelmann F., 2015. Cryopreservation of in vitro-grown shoot tips of Cleome rosea Vahl (Cleomaceae) using the V cryo-plate technique. In Vitro Cellular and Developmental Biology-Plant, 51 (6) : 688-695

Coudert Y., Le V. A. T., Adam H., Bes M., Vignols Florence, Jouannic Stefan, Guiderdoni E., Gantet Pascal. , 2015 Identification of CROWN ROOTLESS1-regulated genes in rice reveals specific and conserved elements of postembryonic root formation. New Phytologist, 206 (1), p. 243-254

Couvreur T., 2015. Odd man out : why are there fewer plant species in African rain forests ?. Plant Systematics and Evolution, 301 (5): 1299-1313

Dereeper Alexis, Bocs S., Rouard M., Guignon V., Ravel Sébastien, Dubreuil Tranchant C., Poncet V., Garsmeur O., Lashermes P., Droc G. , 2015The coffee genome hub : a resource for coffee genomes. Nucleic Acids Research, 43 (D1), p. D1028-D1035.

Dias E. S., Hatt C., Hamon S., Hamon P., Rigoreau M., Crouzillat D., Carareto C. M. A., Kochko de A., Guyot R., 2015. Large distribution and high sequence identity of a Copia-type retrotransposon in angiosperm families. Plant Molecular Biology, 89 (1-2) : 83-97

Dufey I., Draye X., Lutts S., Lorieux M., Martinez C., Bertin P., 2015. Novel QTLs in an interspecific backcross Oryza sativa x Oryza glaberrima for resistance to iron toxicity in rice. Euphytica, 204 (3) : 609-625.

Duitama J., Silva A., Sanabria Y., Cruz D. F., Quintero C., Ballen C., Lorieux M., Scheffler B., Farmer A., Torres E., Oard J., Tohme J., 2015. Whole genome sequencing of elite rice cultivars as a comprehensive information resource for marker assisted selection. Plos One, 10 (4), p. e0124617 [20 p.].

Errouane K, Doulbeau S, Vaissayre V, Leblanc O, Collin M, Kaid-Harche M, Dussert S, 2015. The embryo and the endosperm contribute equally to argan seed oil yield but confer distinct lipid features to argan oil. Food Chemistry, 181: 270-276. doi:10.1016/j.foodchem.2015.02.112

Fahr M., Laplaze L., El Mzibri M., Doumas P., Bendaou N., Hocher V., Bogusz D., Smouni A., 2015. Assessment of lead tolerance and accumulation in metallicolous and non-metallicolous populations of Hirschfeldia incana. Environmental and Experimental Botany, 109 : 186-192.

Feuillassier L., Masanet P., Romans P., Barthelemy D., Engelmann F., 2015. Towards a vitrification-based cryopreservation protocol for the coral Pocillopora damicornis L. : tolerance of tissue balls to 4.5 M cryoprotectant solutions. Cryobiology, 71 (2) : 224-235.

Haider M. S., Khan I. A., Jaskani M. J., Naqvi S. A., Hameed M., Azam M., Khan A. A., Pintaud J.C., 2015. Assessment of morphological attributes of date palm accessions of diverse agro-ecological origin. Pakistan Journal of Botany, 47 (3) : 1143-1151

Hamon P., Hamon S., Razafinarivo N.J., Guyot R., Siljak-Yakovlev S., Couturon E., Crouzillat D., Rigoreau M., Akaffou S., Rakotomalala J.J., de Kochko A, 2015. Coffea genome organization and evolution. In : Preedy V. (ed.) Coffee in health and disease prevention. San Diego : Academic Press :29-37

Hutin M., Sabot F., Ghesquière A., Koebnik Ralf, Szurek B., 2015. A knowledge-based molecular screen uncovers a broad-spectrum OsSWEET14 resistance allele to bacterial blight from wild rice. Plant Journal, , 84 (4) : 694-703..

Jalloul A., Sayegh M., Champion A., Nicole Michel, 2015. Bacterial blight of cotton. Phytopathologia Mediterranea, 54 (1) : 3-20.

Jiang Q. B., Ma Y. Z., Zhong C. L., Zeng B. S., Zhang Y., Pinyopusarerk K., Bogusz D., Franche C., 2015. Optimization of the conditions for Casuarina cunninghamiana Miq. genetic transformation mediated by Agrobacterium tumefaciens. Plant Cell Tissue and Organ Culture, 121 (1), p. 195-204.

Landey R. B., Cenci A., Guyot R., Bertrand B., Georget F., Dechamp E., Herrera J. C., Aribi J., Lashermes P., Etienne H., 2015. Assessment of genetic and epigenetic changes during cell culture ageing and relations with somaclonal variation in Coffea arabica (vol 122, pg 517, 2015). Plant Cell Tissue and Organ Culture, 122 (3): 533-533

Landey R. B., Cenci A., Guyot R., Bertrand B., Georget F., Dechamp E., Herrera J. C., Aribi J., Lashermes P., Etienne H., 2015. Assessment of genetic and epigenetic changes during cell culture ageing and relations with somaclonal variation in Coffea arabica. Plant Cell Tissue and Organ Culture, 122 (3), p. 517-531

Laplaze L., Lucas M., Champion A. 2015. Rhizobial root hair infection requires auxin signaling. Trends in Plant Sciences, 20 (6): 332-334.

Larrieu A., Champion A., Legrand J., Lavenus J., Mast D., Brunoud G., Oh J., Guyomarc’h S., Pizot M., Farmer E.E., Turnbull C., Vernoux T., Bennett M.J. & Laplaze L., 2015. A fluorescent hormone biosensor reveals the dynamics of jasmonate signalling in plants. Nature communications, DOI: 10.1038/ncomms7043

Lavenus J., Goh T., Guyomarc'h S., Hill K., Lucas M., Voss U., Kenobi K., Wilson M., Farcot E., Hagen G., Guilfoyle T.J., Fukaki H., Laplaze L., and Bennett M.J., 2015. Inference of the Arabidopsis lateral root gene regulatory network reveals a bifurcation mechanism that defines primordia flanking and central zones. The Plant Cell, 27 (5) : 1368-1388.

Matsumoto T., Yamamoto S., Fukui K., Rafique T., Engelmann F., 2015. Niino T. Cryopreservation of persimmon shoot tips from dormant buds using the D cryo-plate technique. Horticulture Journal, 84 (2) : 106-110.

Markovic Z., Preiner D., Stupic D., Andabaka Z., Simon S., Voncina D., Maletic E., Kontic J. K., Chatelet P., Engelmann F., 2015. Cryopreservation and cryotherapy of grapevine (Vitis vinifera L.). Vitis, 54 (Special Issue): 247-251.

Ming R., VanBuren R., Wai C. M., Tang H. B., Schatz M. C., Bowers J. E., Lyons E., Wang M. L., Chen J., Biggers E., Zhang J. S., Huang L. X., Zhang L. M., Miao W. J., Zhang J., Ye Z. Y., Miao C. Y., Lin Z. C., Wang H., Zhou H. Y., Yim W. C., Priest H. D., Zheng C. F., Woodhouse M., Edger P. P., Guyot R., Guo H. B., Guo H., Zheng G. Y., Singh R., Sharma A., Min X. J., Zheng Y., Lee H., Gurtowski J., Sedlazeck F. J., Harkess A., McKain M. R., Liao Z. Y., Fang J. P., Liu J., Zhang X. D., Zhang Q., Hu W. C., Qin Y., Wang K., Chen L. Y., Shirley N., Lin Y. R., Liu L. Y., Hernandez A. G., Wright C. L., Bulone V., Tuskan G. A., Heath K., Zee F., Moore P. H., Sunkar R., Leebens-Mack J. H., Mockler T., Bennetzen J. L., Freeling M., Sankoff D., Paterson A. H., Zhu X. G., Yang X. H., Smith J. A. C., Cushman J. C., Paull R. E., Yu Q. Y. , 2015. The pineapple genome and the evolution of CAM photosynthesis. Nature Genetics, 47 (12): 1435-1442.

Monat C., Dubreuil Tranchant C., Kougbeadjo A., Farcy C., Ortega-Abboud E., Amanzougarene S., Ravel S., Agbessi M., Orjuela-Bouniol J., Summo M., Sabot F., 2015. TOGGLE : toolbox for generic NGS analyses. Bmc Bioinformatics, 16, p. art. 374 [8 p.].

Moumouni K. H., Kountche B. A., Jean M., Hash C. T., Vigouroux Y., Haussmann B. I. G., Belzile F., 2015. Construction of a genetic map for pearl millet, Pennisetum glaucum (L.) R. Br., using a genotyping-by-sequencing (GBS) approach. Molecular Breeding, 35 (1), p. art. 5 [10 p.].

Naqvi S. A., Khan I. A., Pintaud J.C., Jaskani M. J., Ali A., 2015. Morphological characterization of pakistani date palm (Phoenix dactylifera l.) genotypes. Pakistan Journal of Agricultural Sciences, 52 (3) : 645-650

Nguyen T. D., Lacombe S., Bangratz M., Ta H. A., Vinh D. N., Gantet P., Brugidou C., 2015. P2 of Rice grassy stunt virus (RGSV) and p6 and p9 of Rice ragged stunt virus (RRSV) isolates from Vietnam exert suppressor activity on the RNA silencing pathway. Virus Genes, 51 (2) : 267-275.

Pariasca-Tanaka J., Lorieux M., He C., McCouch S., Thomson M. J., Wissuwa M., 2015. Development of a SNP genotyping panel for detecting polymorphisms in Oryza glaberrima/O. sativa interspecific crosses. Euphytica, 201 (1) : 67-78.

Poncet V., Scutt C., Tournebize R., Villegente M., Cueff G., Rajjou L., Balliau T., Zivy M., Fogliani B., Job C., Kochko de A., Sarramegna-Burtet V., Job D., 2015. The Amborella vacuolar processing enzyme family. Frontiers in Plant Science, 6, p. art. 618.

Prada J.A., Aguilar M.E., Abdelnour-Esquivel A, Engelmann F.,  2015.  Cryopreservation of Seeds and Embryos of Jatropha curcas L. American Journal of Plant Sciences, 6 : 172-180

Rebolledo M. C., Dingkuhn M., Courtois B., Gibon Y., Clement-Vidal A., Cruz D. F., Duitama J., Lorieux M., Luquet D., 2015. Phenotypic and genetic dissection of component traits for early vigour in rice using plant growth modelling, sugar content analyses and association mapping. Journal of Experimental Botany, 66 (18): 5555-5566.

Roncal J., Couderc M., Baby P., Kahn F., Millan B., Meerow A. W., Pintaud J.C., 2015. Palm diversification in two geologically contrasting regions of western Amazonia. Journal of Biogeography, 42 (8): 1503-1513.

Santos F. C., Guyot R., do Valle C. B., Chiari L., Techio V. H., Heslop-Harrison P., Vanzela A. L. L., 2015. Chromosomal distribution and evolution of abundant retrotransposons in plants : gypsy elements in diploid and polyploid Brachiaria forage grasses. Chromosome Research, 23 (3): 571-582.

Sylvestre I., Engelmann F., 2015. Cryopreservation of in vitro-grown shoot tips of Clinopodium odorum using aluminium cryo-plates. In Vitro Cellular & Developmental Biology-Plant, 51 (2) : 185-191.

Teixeira da Silva J.A., Haenghoon K. & Engelmann F., 2015. Chrysanthemum low-temperature storage and cryopreservation: a review. Plant Cell Tiss Organ Cult, 120: 423 – 440

Sto I. M., Orr R. J. S., Fooyontphanich K., Jin X., Knutsen J. M. B., Fischer U., Tranbarger T., Nordal I., Aalen R. B., 2015. Conservation of the abscission signaling peptide IDA during Angiosperm evolution : withstanding genome duplications and gain and loss of the receptors HAE/HSL2. Frontiers in Plant Science, 6, p. art. 931 [12 p.]

VanBuren R., Zeng F. C., Chen C. X., Zhang J. S., Wai C. M., Han J., Aryal R., Gschwend A. R., Wang J. P., Na J. K., Huang L. X., Zhang L. M., Miao W. J., Gou J. Q., Arro J., Guyot R., Moore R. C., Wang M. L., Zee F., 2015. Charlesworth D., Moore P. H., Yu Q. Y., Ming R. Origin and domestication of papaya Y-h chromosome. Genome Research 25 (4) : 524-533.

Voss U., Wilson M. H., Kenobi K., Gould P. D., Robertson F. C., Peer W. A., Lucas M., Swarup K., Casimiro I., Holman T. J., Wells D. M., Peret B., Goh T., Fukaki H., Hodgman T. C., Laplaze L., Halliday K. J., Ljung K., Murphy A. S., Hall A. J., Webb A. A. R., Bennett M. J., 2015. The circadian clock rephases during lateral root organ initiation in Arabidopsis thaliana. Nature Communications, 6, p. art. 7641 [9 p.].                                     

Vujović T., Sylvestre I., Ružić Dj. & Engelmann F., 2011. Cryopreservation of cherry plum and blackberry shoot tips by droplet-vitrification.  

Vujovic T., Chatelet P., Ruzic D., Engelmann F., 2015. Cryopreservation of Prunus spp. using aluminium cryo-plates. Scientia Horticulturae, 195 : 173-182

Zehdi-Azouzi S., Cherif E., Moussouni S., Gros-Balthazard M., Naqvi S. A., Ludena B., Castillo K., Chabrillange N., Bouguedoura N., Bennaceur M., Si-Dehbi F., Abdoulkader S., Daher A., Terral J. F., Santoni S., Ballardini M., Mercuri A., Ben Salah M., Kadri K., Othmani A., Littardi C., Salhi-Hannachi A., Pintaud J.C., Aberlenc Bertossi F., 2015. Genetic structure of the date palm (Phoenix dactylifera) in the Old World reveals a strong differentiation between eastern and western populations. Annals of Botany, 116 (1) : 101-112.

 

2014

Ahmadi N., Audebert A., Bennett M.J., Bishopp A., Costa de Oliveira A., Courtois B., Diedhiou A., Diévart A., Gantet P., Ghesquière A., Guiderdoni E., Henry A., Inukai Y., Kochian L., Laplaze L., Lucas M., Trung Luu D., Manneh B., Mo X., Muthurajan R., Périn C., Price A., Robin S., Sentenac H., Sine B., Uga Y., Véry A.A., Wissuwa M., Wu P. and Xu J., 2014. The roots of future rice harvests. Rice, 7:29

Bakasso Y., Zaman-Allah M., Mariac C., Billot C., Vigouroux Y., Zongo J. D., Saadou M., 2014. Genetic diversity and population structure in a collection of roselle (Hibiscus sabdariffa L.) from Niger. Plant Genetic Resources-Characterization and Utilization, 12 (2) : 207-214. http://dx.doi.org/10.1017/s1479262113000531

Barraco G., Sylvestre I., Collin M., Escoute J., Lartaud M., Verdeil J.L., Engelmann F., 2014. Histocytological analysis of yam (Dioscorea alata) shoot tips cryopreserved by encapsulation–dehydration. Protoplasma, 251 :177 – 189

Castano F., Stauffer F., Marquinez X., Crevecoeur M., Collin M., Pintaud J.C., Tregear J., 2014. Floral structure and development in the monoecious palm Gaussia attenuata (Arecaceae ; Arecoideae). Annals of Botany, 114 (7) : 1483-1495.

Couvreur T., 2014. Revision of the African genus Uvariastrum (Annonaceae). Phytokeys33 : 1-40.

Denoeud F., Guyot R.,..., Campa C., ..., Dussert  S.,..., Joët T.,..., Poncet V.,..., Tranchant-Dubreuil C.,..., de Kochko A. et al., 2014. The Coffee Genome Provides Insight into Convergent Evolution of Caffeine Biosynthesis, Science, 345 (6201) : 1181-1184

Diédhiou I., Tromas A., Cissoko M., Gray K., Parizot B., Crabos A., Alloisio N., Fournier P., Carro L., Svistoonoff S., Gherbi H., Hocher V., Diouf D., Laplaze L. and Champion A., 2014. Identification of potential transcriptional regulators of actinorhizal symbioses in Casuarina glauca and Alnus glutinosa. BMC Plant Biology, 14:342

El Baidouri M., Carpentier M.C., Cooke R., Gao D.Y., Lasserre E., Llauro C., Mirouze M., Picault N., Jackson S. A., Panaud O.,  2014. Widespread and frequent horizontal transfers of transposable elements in plants. Genome Research, 24 (5) : 831-838.

Engelmann-Sylvestre I. and Engelmann F., 2014. Effect of various growth regulators on growth of yam (Dioscorea trifida L.) in vitro shoot tips. Afr. Jr. Biotech. 13(15):1645-1649

Fahr M., Laplaze L., Bendaou N., Hocher V., El Mzibri M., Bogusz  D. and Smouni A., 2014. Effect of lead on root growth. Frontiers in Plant Science, 4 (175) : 1-7

Fahr M., Laplaze L., El Mzibri M., Doumas P., Bendaou N., Hocher V., Bogusz D. and Smouni A. 2014. Lead tolerance and accumulation in metallicolous and non-metallicolous populations of Hirschfeldia incana. Experimental & Environmental Botany , in press.

Feuillassier L., Romans P., Engelmann-Sylvestre I., Masanet P., Barthélémy D. et  Engelmann F., 2014. Tolerance of apexes of coral Pocillopora damicornis L. to cryoprotectant solutions, Cryobiology, 68 (1) : 96-106.

Fock-Bastide I., Palama T.L., Bory S., Lecolier A., Noirot M., Joët T., 2014. Expression profiles of key phenylpropanoid genes during Vanilla planifolia pod development reveal a positive correlation between PAL gene expression and vanillin biosynthesis. Plant Physiology and Biochemistry, 74 : 304-314.

Imanishi L., Perrine-Walker F., Ndour A., Vayssieres A., Conejero G., Lucas M., Champion A., Laplaze L., Wall L. and Svistoonoff S., 2014. Role of auxin during intercellular infection of Discaria trinervis by Frankia. Frontiers in Plant Science, 5:399. doi:10.3389/fpls.2014.00399

Jaligot E., Hooi W.Y., Debladis E., Richaud F., Beulé T., Collin M., Agbessi M.D.T., Sabot F., Garsmeur O., D’Hont A., Syed Alwee S.S.R. & Rival A., 2014. DNA methylation and transcriptional activity of the EgDEF1 gene and neighboring retrotransposons in mantled somaclonal variants of oil palm. PLoS One, : e91896.

Labeyrie V., Deu M., Barnaud A., Calatayud C., Buiron M., Wambugu P., Manel S., Glaszmann J.C., Leclerc C., 2014. Influence of ethnolinguistic diversity on the sorghum genetic patterns in subsistence farming systems in Eastern Kenya. Plos One, 9 (3), p. e92178.

Markovic Z., Chatelet P., Preiner D., Sylvestre I., Kontic J. K., Engelmann F., 2014. Effect of shooting medium and source of material on grapevine (vitis vinifera l.) shoot tip recovery after cryopreservation. Cryoletters, 35 (1), 40-47

Marković Z., Preiner D., Mihovilović Bošnjak A, Safner T., Stupić D., Andabaka Z., Maletić1 E., Chatelet P., Engelmann F., Karoglan Kontić J., 2014. In vitro introduction of healthy and virus-infected genotypes of native Croatian grapevine cultivars. Cent. Eur. J. Biol., 9 (11) : 1087-1098

Mirouze M., Vitte C., 2014. Transposable elements, a treasure trove to decipher epigenetic variation: insights from Arabidopsis and crop epigenomes. Journal of Experimental Botany, 65 (10) : 2801-2812.

Nabholz B., Sarah G., Sabot F., Ruiz M., Adam H., Nidelet S., Ghesquière A., Santoni S., David J., Glemin S.,  2014. Transcriptome population genomics reveals severe bottleneck and domestication cost in the African rice (Oryza glaberrima). Molecular Ecology, 23 (9) : 2210-2227.

Niino T.,Wunna, Watanabe K., Nohara N., Rafique T., Yamamoto S.I., Fukui K., Valle Arizaga M., Castillo Martinez C.R., Matsumoto T., Engelmann F., 2014. Cryopreservation of mat rush lateral buds by air dehydration using aluminum cryo-plate. Plant Biotechnology 31, 1–7

Ogawa S., Gomez Selvaraj M., Joseph Fernando A., Lorieux M., Ishitani M., McCouch S., Arbelaez J.D., 2014. N and P mediated seminal root elongation response in rice seedling. Plant and Soil, 375 : 303-315

Polzin F., Sylvestre I., Dechamp E., Ilbert P., Etienne H., Engelmann F., 2014. Effect of activated charcoal on multiplication of African yam (Dioscorea cayenensis-rotundata) nodal segments using a temporary immersion bioreactor (RITA (R)). In Vitro Cellular and Developmental Biology-Plant,50 (2) : 210-216.

Rival A. 2014. Enjeux biologiques, agronomiques et environnementaux de la culture du palmier à huile. Techniques de l’ingénieur, Doc F 6 075

Romero L.E., Lozano I., Garavito A., Carabali S.J., Triana M., Villareal N., Reyes L., Duque M.C., Martinez C.P., Calvert L., Lorieux M., 2014. Major QTLs control resistance to Rice hoja blanca virus and its vector Tagosodes orizicolus. G3: Genes Genomes Genetics 4:133-142

Sabot F., 2014. Tos17 rice element : incomplete but effective. Mobile DNA, 5, p. art. 10.

Saidou A.A., Thuillet A.C., Couderc M., Mariac C., Vigouroux Y., 2014. Association studies including genotype by environment interactions : prospects and limits. Bmc Genetics, 15, p. art. 3.

Saidou A.A., Clotault J., Couderc M., Mariac C., Devos K. M., Thuillet A.C., Amoukou I. A., Vigouroux Y., 2014. Association mapping, patterns of linkage disequilibrium and selection in the vicinity of the phytochrome C gene in pearl millet. Theoretical and Applied Genetics, 127 (1) : 19-32.

Salma M., Sylvestre I., Collin M., Escoute J., Lartaud M., Yi J. Y., Kim H. H., Verdeil J. L., Engelmann F., 2014. Effect of the successive steps of a cryopreservation protocol on the structural integrity of Rubia akane Nakai hairy roots. Protoplasma , 251 (3) : 649-659.

Sow M., Ndjiondjop M.N., Sido A., Mariac C., Laing M., Bezançon G., 2014. Genetic diversity, population structure and differentiation of rice species from Niger and their potential for rice genetic resources conservation and enhancement. Genetic Resources and Crop Evolution, 61 (1) : 199-213.

Zevallos B., Cejas I., Engelmann F., Carputo D., Aversano R. , Scarano M.T., Yanes E., Martínez-Montero M. and Lorenzo J.C., 2014. Phenotypic and molecular characterization of plants regenerated from non-cryopreserved and cryopreserved wild Solanum lycopersicum Mill. Seeds. Cryoletters, 35 : 216-225

Zhou F., He H., Chen H., Yu H., Lorieux M., and He Y., 2013. Genomics-Based Breeding Technology. In: Q. Zhang and R.A. Wing (eds.), Genetics and Genomics of Rice, Plant Genetics and Genomics: Crops and Models 5, Springer Science+Business Media New York 2014

Weigend M., Luebert F., Gottschling M., Couvreur T., Hilger H.H., Miller J.S., 2014. From capsules to nutlets-phylogenetic relationships in the Boraginales. Cladistics, 30 (5) : 508-518.

 

2013

Abdel-Lateif K., Vaissayre V., Verries C., Meudec E., Gherbi H., Perrine-Walker F, Cheynier V., Svistoonoff S., Franche C., Bogusz D. and Hocher V., 2013. The silencing of the chalcone synthase (CHS) gene in Casuarina glauca highlights the important role of flavonoids during nodulation. New Phytol., 199 (4) : 1012 - 1021

Albert V.A.,… Der J.P., Chamala S., Chanderbali A.S., Estill J.C., de Kochko A, …, Poncet V., … et al,  2013. Amborella Genome Project.The Amborella Genome and the Evolution of Flowering Plants. in press (75 auteurs)

AL-Tam F., Adam H., dos Anjos A., Lorieux M., Larmande P., Ghesquière A., Jouannic S. and Reza Shahbazkia H., 2013. P-TRAP: a Panicle Trait Phenotyping tool. BMC Plant Biology, 13:122

Andrianasolo D.N. & Davis A.P. & Razafinarivo N.J. & Hamon S. & Rakotomalala J.J. & Sabatier S.A. & Hamon P., 2013. High genetic diversity of in situ and ex situ populations of Madagascan coffee species: further implications for the management of coffee genetic resources. Tree Genetics & Genomes, 9 (5) : 1295-1312

Assoumane A., Zoubeirou A.M., Rodier-Goud M., Favreau B., Bezançon G., Verhaegen D., 2013. Highlighting the occurrence of tetraploidy in Acacia senegal (L.) Willd. and genetic variation patterns in its natural range revealed by DNA microsatellite markers. Tree Genetics and Genomes, 9 (1) : 93 - 106.

Auguy  F., Fahr  M.,Moulin E., Smard  P. , Brugel  A., Laplaze L., El  Zibri  M., Filali M., Altouf  A., Doumas  P., Mouni S., 2013. A.Lead tolerance and accumulation in Hirschfeldia incana, a Mediterranean Brassicaceae from metalliferous mine spoils. Plos One, 8 (5) : e61932.

Baker W.J., Couvreur T., 2013. Global biogeography and diversification of palms sheds light on the evolution of tropical lineages. I. Historical biogeography. Journal of Biogeography, 40 (2) : 274 - 285

Baker W.J., Couvreur T., 2013. Global biogeography and diversification of palms sheds light on the evolution of tropical lineages. Versification history and origin of regional assemblages. Journal of Biogeography, 40 (2) : 286 - 298.

Ballardini M., Mercuri A., Littardi C., Abbas S., Couderc M., Ludena B., Pintaud J.C., 2013. The chloroplast DNA locus psbZ-trnfM as a potential barcode marker in Phoenix L. (Arecaceae). Zookeys365: Special issue:71-82

Barnaud A., Kalwij J.M., McGeoch M.A., Jansen van Vuuren B., 2013. Patterns of weed invasion: evidence from the spatial genetic structure of Raphanus raphanistrum. Biol Invasions, 15: 2455–2465

Baroux C., Autran D., Raissig M.T., Grimanelli D., Grossniklaus U., 2013. Parental contributions to the transcriptome of early plant embryos. Current Opinion in Genetics and Development, 23 (1): 72 - 74.

Barraco G., Sylvestre I., Iapichino G., Engelmann F., 2013. Investigating the cryopreservation of nodal explants of Lithodora rosmarinifolia (Ten.) Johnst., a rare, endemic Mediterranean species. Plant Biotechnology Reports, 7 (2) : 141 - 146.

Benelli C., De Carlo A., Engelmann F., 2013. Recent advances in the cryopreservation of shoot-derived germplasm of economically important fruit trees of Actinidia, Diospyros, Malus, Olea, Prunus, Pyrus And Vitis. Biotechnology Advances, 31, (2):175 - 185

Bräutigam K., Vining K.J., Lafon-Placette C., Fossdal C.G., Mirouze M., Marcos José Gutiérrez, Fluch S., Fraga M.F., Guevara M.Á., Abarca D., Johnsen Ø., Maury S., Strauss S.H., Campbell M., Rohde A., Díaz-Sala C., Cervera M.T., 2013. Epigenetic regulation of adaptive responses of forest tree species to the environment. Ecology and Evolution, 3 : 399 - 415

Butterfield  B.J., Cavieres L.A., Callaway R.M. et al., 2013. Alpine cushion plants inhibit the loss of phylogenetic diversity in severe environments. Ecology Letters, 16 (4) :  478 - 486

Cejas I., Méndez R., Villalobos A., Palau F., Aragón C., Engelmann F., Carputo D., Aversano R., Edel Martínez M., Lorenzo J.C., 2013. Phenotypic and Molecular Characterization of Phaseolus vulgaris Plants from Non-Cryopreserved and Cryopreserved Seeds. American Journal of Plant Sciences, 4 : 844 - 849

Cuifang Duan, Argout X., Gébelin V., Summo M., Dufayard J.F., Leclercq J., Kuswanhadi, Piyanuch Piyatrakul, Pirrello J., Rio M., Champion A. and Montoro P., 2013. Identification of the Hevea brasiliensis AP2/ERF superfamily by RNA sequencing. BMC Genomics, 14 : 30

Cherif E., Zehdi S., Castillo K., Chabrillange N., Abdoulkader S., Pintaud J.C., Santoni S., Salhi-Hannachi A., Glemin S. and Aberlenc-Bertossi F., 2013. Male-specific DNA markers provide genetic evidence of an XY chromosome system, a recombination arrest and allow the tracing of paternal lineages in date palm. New Phytologist, 197 (2) : 409

Coudert Y., Dievart A., Droc G. and Gantet P., 2013. ASL/LBD Phylogeny Suggests that Genetic Mechanisms of Root Initiation Downstream of Auxin Are Distinct in Lycophytes and Euphyllophytes. Molecular Biology and Evolution, 30 (3) : 569 - 572   

Couvreur T.L.P. and Baker W.J., 2013. Tropical rain forest evolution: palms as a model Group. BMC Biology, 11: 48

Cruz-Cruz C.A., González-Arnao M.T. and Engelmann F., 2103. Biotechnology and Conservation of Plant Biodiversity. Resources, 2 : 73 – 95

De Mita S., Thuillet A.C., Gay L., Ahmadi N.,Manel S., Ronfort J., Vigouroux Y., 2013. Detecting selection along environmental gradients: analysis of eight methods and their effectiveness for outbreeding and selfing populations. Molecular Ecology, 22, (5) : 1383 – 1399

Dereeper A., Guyot R., Tranchant-Dubreuil C., Anthony F., Argout X., de Bellis F., Combes M.C., Gavory F., de Kochko A., Kudrna D., Leroy T., Poulain J., Rondeau M., Xiang Song, Wing R., Lashermes P., 2013. BAC-end sequences analysis provides first insights into coffee (Coffea canephora P.) genome composition and evolution. Plant Mol Biol, 83: 177 - 189

Diagne N., Arumugam K., Ngom M., Nambiar-Veetil M., Franche C., Narayanan, K.K. and Laplaze L., 2013. BioMed Research International, Article ID 948258, 9 pages

Diagne N., Diouf  D., Svistoonoff  S., Kane A.,  Noba K. C., Bogusz D. , Duponnois R., 2013. Casuarina in Africa: Distribution, role and importance of arbuscular mycorrhizal, ectomycorrhizal fungi and Frankia on plant development. Journal of Environmental Management, (128) : 204 – 209.

Diagne N., Diouf D., Svistoonoff S., Franche C., Kane A., Bogusz D. and Duponnois R. 2013. Establishment of Casuarina an exotic tree species in Africa: ecological role and interaction with arbuscular and ectomycorrhizal symbionts. Soil Biology and Biochemistry, 57: 468 - 476.

Diagne N., Thioulouse J., Sanguin H., Prin Y., Krasova-Wade T., Sylla S., Galiana A., Baudoin E., Neyra M., Svistoonoff S., Lebrun M., Duponnois R., 2013. Ectomycorrhizal diversity enhances growth and nitrogen fixation of Acacia mangium seedlings. Soil Biology and Biochemistry 57: 468 – 476

Dievart A., Coudert Y., Gantet P., Pauluzzi G., Puig J., Fanchon D., Ahmadi N., Courtois B., Guiderdoni E., Perin C., 2013. Dissection des bases biologiques de caractères d'intérêt chez le riz : architecture et développement du système racinaire. Cahiers de l'Agriculture, 22 : 475 – 483

Dussert S., Guerin C., Andersson M., Joët T., Tranbarger T.J., Pizot M., Sarah G., Omore A., Durand-Gasselin T. and Morcillo F., 2013. Comparative Transcriptome Analysis of Three Oil Palm Fruit and Seed Tissues That Differ in Oil Content and Fatty Acid Composition. Plant Physiology, 162 (3) : 1337 - 1358.

Eiserhardt W.L., Svenning J.C., Baker W.J., Couvreur T.L.P.& Balslev H., 2013. Dispersal and niche evolution jointly shape the geographic turnover of phylogenetic clades across continents. Scientific reports, 3 : 1164

Engelmann-Sylvestre I, Engelmann F., 2013. Effect of 24-Epibrassinolide on Growth of in Vitro Shoot Tips of Different Yam (Dioscorea Spp.) Species. American Journal of Plant Sciences, (4) : 2271-2274

Engelmann F., Dussert S., 2013. Cryopreservation. In: Conservation of Tropical Plant Species. Normah MN, Chin HF, Reed B (Eds.) Springer, New York : 107 - 119.

Fozard J.A., Lucas M., King J.R., Jensen O.E., 2013. Vertex-element models for anisotropic growth of elongated plant organs. Frontiers in Plant Science4 : 233.

Gonzales-Arnao M.T. Engelmann F., 2013.Crioconservacion de plantas en America Latina y el Caribe. Editiones Maria Teresa Gonzales-Arnao et Florent Engelman. (ouvrage)

Grimanelli D., Roudier F., 2013. Chapter Six – Epigenetics and Development in Plants: Green Light to Convergent Innovations. Current Topics in Developmental Biology, 104 : 189 - 222

Gros-Balthazard M., Newton, N., Ivorra S., Tengberg M., Pintaud J.C., Terral J.F., 2013. Origines et domestication du palmier-dattier (Phoenix dactylifera L.) : état de l’art et perspectives d’étude. Anthropobotanica. (sous presse)

Hardy O.J., Born C.,Budde K., Daïnou K., Dauby G., Duminil J., Ewédjé E.E.B.K., Gomez C., Heuertz M., Koffi G.K., Lowe A.J., Micheneau C., Ndiade-Bourobou D.,, Piñeiro R., Poncet V., 2013. Comparative phylogeography of African rain forest trees: A review of genetic signatures of vegetation history in the Guineo-Congolian region. Comptes Rendus Geoscience, 345, (7–8) : 284–296

Hocher V., Alloisio N., LaplazeL., Bogusz D. and Normand P., 2013. Genomics of the root-actinorhizal symbiosis. In : Roots Genomics and Soil Interactions. M. Crespi (ed). Wiley-Blackwell : 211 - 226.

Joët T., Ourcival J.M., Dussert S., 2013. Ecological significance of seed desiccation sensitivity in Quercus ilex. Annals of Botany, 11 (4) : 693 - 701 .

Kam H., Laing M.D., Séré Y., Deless T., Ghesquière A., Ahmadi N., Ndjiondjop M.N., 2013. Evaluation of a collection of rice landraces from Burkina Faso for resistance or tolerance to Rice yellow mottle virus. Journal of Plant Pathology, 95 (3) : 485 - 492.

Koffi Y., N’Nan-Alla O., Konan Konan J.L., Malaurie B. and Engelmann F., 2013. Morphological and agronomical characteristics of coconut (Cocos nucifera L.) palms produced from in vitro cultured zygotic embryos. In Vitro Cell.Dev.Biol.Plant, DOI 10.1007/s11627-013-9531-y

Kountché B.A., Hash C.T., DodoH., Laoualy O.,  Sanogo M.D., Timbeli A., Vigouroux Y., This D., Nijkamp R, Haussmann B.I.G., 2013. Development of a pearl millet Striga-resistant genepool: Response to five cycles of recurrent selection under Striga-infested field conditions in West Africa.  Field Crops Research, 154: 82 - 90

Lavenus J., Band L., Middleton A., Wilson M., Lucas M., Laplaze L., and Bennett, M. 2013. Towards a Virtual Root:Interaction of genomics and modeling to develop predictive biology approaches. In : Roots Genomics and Soil Interactions. M. Crespi (ed). Wiley-Blackwell : 79 - 92.

Lavenus J., Goh T., Roberts I., Guyomarc’h S., Lucas M., De Smet I, Fukaki H., Beeckman T., Bennett M. and Laplaze L., 2013. Lateral root development in Arabidopsis. Fifty shades of auxin. Trends in Plant Science, 18 (8) : 450 - 458

Lorieux M., Garavito A., Bouniol J., Gutiérrez A., Ndjiondjop M.N., Guyot R., Martinez C.P., Tohme J.. and Ghesquière A., 2013. Unlocking the O. glaberrima treasure for rice breeding in Africa.In « Realizing Africa’s Rice Promise”. Marco Wopereis and David Johnson, Eds. CABI, London

Lucas M., Kenobi K., von Wangenheim D., Vo U., Swarup K., De Smet I., Van Damme D., Lawrence T., Péret B., Moscardi E., Barbeau D., Godin C., Salt D., Guyomarc’h S., Stelzer E.H.K., Maize A., Laplaze L. and Bennett M.J., 2013. Lateral root morphogenesis is dependent on the mechanical properties of the overlaying tissues. PNAS, 110 (13) : 5229 -5234

Marković Z., Chatelet P., Sylvestre I., Karoglan Kontić J. & Engelmann F., 2013. Cryopreservation of grapevine (Vitis vinifera L.) in vitro shoot tips using encapsulation-dehydration and droplet-vitrification. Central European Journal of Biology, 8 (10) : 993 -1000

Meynard D., Mieulet D., Ben Saad R., Breitler JC., Petit J., Gantet P., Hassairi A., Guiderdoni E., 2013. Applications de la transgenèse а l'amélioration variétale du riz.  Cahiers de l'Agriculture, 22 : 494 - 505

Mieulet D., Meynard D., Sire C., Petit J., Breitler JC., Perin C., Dievart A., Fanchon D., Courtois B., Verdeil J.L.., Gantet P., Guiderdoni E., 2013. La transformation génétique, un outil pour l'analyse fonctionnelle du génome du riz. Cahiers de l'Agriculture, 22 : 484 - 493

Morcillo F., Cros D., Billotte N., Ngando-Ebongue G.F., Domonhédo H., Pizot M., Cuéllar T., Espéout S., Dhouib R., Bourgis F., Claverol S., Tranbarger T.J., Nouy B., Arondel V., 2013. Improving palm oil quality through identification and mapping of the lipase gene causing oil deterioration. Nature Communication, 4 : 2160

Niino T., ..., Yamamoto S.-i, Fukui K., Castillo Martínez C.R., Valle Arizaga M., Matsumoto T. and Engelmann F., 2013. Dehydration improves cryopreservation of mat rush  (Juncus decipiens Nakai) basal stem buds on cryo-plates. CryoLetters 34 (6), 549-560.

Orjuela J., Sabot F., Chéron S., Chrestin H., Adam H., Lorieux M., Vigouroux Y., Ghesquière A., 2013. An exhaustive analysis of the African Rice Genetic Diversity through a global genotyping. soumis à Heredity 

Orjuela J.,  Thiémélé Deless E.F, Kolade O., Chéron S., Ghesquière A. et Albar L., 2013. A recessive resistance to Rice yellow mottle virus is associated with a rice homolog of the CPR5 gene, a regulator of active defence mechanisms. Molecular Plant-Microbe Interactions, 26 (12) : 1455 – 1463 

Orman B., Parizot B., Gantet P., Beeckman T., Bennett M., Draye X., 2013. Post-embryonic root organogenesis in cereals: branching out from model plants. TRENDS in Plant Science, 18 : 459 - 467

Pautasso M., Aistara G., Barnaud A., Caillon S., Clouvel P., Coomes O.T., Delêtre M., Demeulenaere E., De Santis P., Döring T., Eloy L., Emperaire L., Garine E., Goldringer I., Jarvis D., Joly H.I., Leclerc C., Louafi S., Martin P., Massol F., McGuire S., McKey D., Padoch C., Soler C., Thomas M., Tramontini S., 2013. Seed exchange networks for agrobiodiversity conservation. A review. Agron. Sustain. Dev., 33 : 151 – 175

Polzin F., Sylvestre I., Déchamp E., Ilbert P., Etienne H. & Engelmann F., 2013. Effect of activated charcoal on multiplication of African yam (Dioscorea cayenensis-rotundata) nodal segments using a temporary immersion bioreactor (RITA®). In Vitro Cell. Dev. Biol. Plant, DOI 10.1007/s11627-013-9552-6

Poncet V., Munoz F., Munzinger J., Pillon Y., Gomez C., Couderc M., Tranchant-Dubreuil C., Hamon S., de Kochko A., 2013. Phylogeography and niche modelling of the relict plant Amborella trichopoda (Amborellaceae) reveal multiple Pleistocene refugia in New Caledonia. Molecular Ecology, 22 : 6163 - 6178

Puig J., Meynard D., Giang Ngan Khong, Pauluzzi G., Guiderdoni E., Gantet P., 2013. Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice. Gene Expression Patterns, 13 (5-6) : 160 - 170

Razafinarivo N.J., Guyot R., Davis A.P., Couturon E., Hamon S., Crouzillat D., Rigoreau M., Dubreuil-Tranchant C., Poncet V., de Kochko A., Rakotomalala J.J., Hamon P., 2013. Genetic structure and diversity of coffee (Coffea) across Africa and the Indian Ocean islands revealed using microsatellites. Annals of Botany, 111: 229 - 248

Reinders J., Mirouze M., NicoletJ. & Paszkowski J., 2013. Parent-of-origin control of transgenerational retrotransposon proliferation in Arabidopsis. EMBO reports, 14 : 823 – 828

Rey H.Y., Faloci M., Medina R., Dolce N., Engelmann F. and Mroginski L., 2013. Cryopreservation of Arachis pintoi (Leguminosae) somatic embryos. CryoLetters, 34 (6), 571-582.

Rival A., 2013. Palmier a huile : défis et questions à la recherche. OCL, 20 (3) : 133 -142. Ouvrage

Rival A., Levang P., 2013. La palme des controverses, Palmier à huile et enjeux de développement. Eds  Quae Ouvrage

Rival A., Ilbert P., Labeyrie A., Torres E., Doulbeau S., Personne A., Dussert S., Beulé T., Durand-Gasselin T., Tregear J.W., Jaligot E., 2013. Variations in genomic DNA methylation during the long-term in vitro proliferation of oil palm embryogenic suspension cultures. Plant Cell Reports, 32 (3): 359 - 368

Roncal J., Kahn F., Millan B., Couvreur T., Pintaud J.C., 2013. Cenozoic colonization and diversification patterns of tropical American palms : evidence from Astrocaryum (Arecaceae). Botanical Journal of the Linnean Society, 171 (1) : 120 - 139.

Salma M., Engelmann-Sylvestre I., Collin M., Escoute J., Lartaud M., Jung-Yoon Yi, Haeng-Hoon Kim, Verdeil J.L. et Engelmann F., 2013. Effect of the successive steps of a cryopreservation protocol on the structural integrity of Rubia akane Nakai hairy roots. Protoplasma : DOI 10.1007/s00709-013-0565-0

Sanín M.J., Anthelme F., Pintaud J.C., Galeano G., Bernal R., 2013. Juvenile Resilience and Adult Longevity Explain Residual Populations of the Andean Wax Palm Ceroxylon Quindiuense after Deforestation. PlosOne, 8 (10) : e74139

Santi C., Bogusz D., and Franche C., 2013. Nitrogen Fixation in non Legumes - Invited review. Ann. Bot., 111 (5) : 743 – 767

Scarcelli N.Couderc M.Baco M.N.EgahJ. and Vigouroux Y., 2013. Clonal diversity and estimation of relative clone age: application to agrobiodiversity of yam (Dioscorea rotundata). BMC Plant Biology, 13 : 178

She W.J., Grimanelli D., Rutowicz K.,Whitehead M.W.J., Puzio M., Kotlinski M., Jerzmanowski A., Baroux C., 2013. Chromatin reprogramming during the somatic-To-reproductive cell fate transition. plants Development, 140 (19) : 4008 – 4019

Spindel  J., Wright M., Chen C., Cobb J., Gage J., Harrington S., Lorieux M., Ahmadi N., McCouch S., 2013. Bridging the genotyping gap: using genotyping by sequencing  (GBS) to add high‑density SNP markers and new value to  traditional bi‑parental mapping and breeding populations. Theor Appl Genet, 126 :2699 - 2716

Svistoonoff S., Benabdoun F.M., Nambiar-Veetil M., Imanishi L., Vaissayre V., Cesari S., Diagne N., Hocher V., de Billy F., Bonneau J., Wall L., Ykhlef N., Rosenberg C., Bogusz D., Franche C., Gherbi H., 2013. The Independent Acquisition of Plant Root Nitrogen-Fixing Symbiosis in Fabids Recruited the Same Genetic Pathway for Nodule Organogenesis. Plos One, 8 (5) : e64515.

Taedoumg H., Hamon P., 2013. Three new species of Craterispermum (Rubiaceae) from the Lower Guinea Domain. Blumea, 57: 236 - 242

Wells D.M., Laplaze L., Bennett M., and Vernoux T., 2013. Biosensors for phytohormone quantification: challenges, solutions and opportunities. Trends in Plant Sciences, 18 (5) : 244 - 249

Wollbrett J., Larmande P., de Lamotte F. and Ruiz M., 2013. Clever generation of rich SPARQL queries from annotated relational schema: application to Semantic Web Service creation for biological databases. BMC Bioinformatics, 14 : 126

Zevallos B., Cejas I., Valle B., Yabor L., Aragón C., Engelmann F., Edel Martínez M., Lorenzo J.C., 2013. Short-term liquid nitrogen storage of wild tomato (Solanum lycopersicum Mill.) seeds modifies the levels of phenolics in 7 day-old seedlings. Scientia Horticulturae, 160 : 264 - 267

Zhong C. , Mansour S., Nambiar-Veetil M., Bogusz D., Franche C., 2013. Casuarina glauca: A model tree for basic research in actinorhizal symbiosis. Journal of Biosciences, 38 (4) : 815-823

 

 

2012

Revues à Comité de lecture

 

Abdel-Lateif K., Bogusz D. and Hocher V., 2012. The role of flavonoids in the establishment of plant roots endosymbioses with arbuscular mycorrhiza fungi, rhizobia and Frankia bacteria. Plant Signalling & Behavior, 7: 636-641.

Aichatou A., Mayaki A.Z., Favreau B., Bezançon G., Saadou M., Verhaegen D., 2012. Differentiation between two sub-species of Acacia senegal complex : Acacia senegal (L.) Willd. and Acacia dudgeoni Craib ex Holland using morphological traits and molecular markers. Genetic Resources and Crop Evolution, 59 (1): 39-48.

Akaffou D.S., Hamon P., Doulbeau S., Keli J., Legnate H., Campa C., Hamon S., de Kochko A., Zoro B.I.A., 2012. Inheritance and relationship between key agronomic and quality traits in an interspecific cross between Coffea pseudozanguebariae Bridson and C. canephora Pierre. Tree Genetics and Genomes, 8 (5) : 1149-1162.

Barnaud A., Vignes H., Risterucci A. M., Noyer J. L., Pham J.L, Blay C., Buiron M., Vigouroux Y., Billot C., 2012.  Development of nuclear microsatellite markers for the fonio, digitaria exilis (poaceae), an understudied west african cereal. American Journal of Botany,  99 (3) : E105-E107.

Barraco G., Chatelet P., Balsemin E., Decourcelle T., Sylvestre I.,
Engelmann F.,
2012.  Cryopreservation of Prunus cerasus through vitrification and replacement of cold hardening with preculture on medium enriched with sucrose and/or glycerol. Scientia Horticulturae, 148: 104–108

Barraco G.,  Sylvestre I.,  Iapichino G. et  Engelmann F., 2012. Investigating the cryopreservation of nodal explants of Lithodora rosmarinifolia (Ten.) Johnst., a rare, endemic Mediterranean species. Plant Biotechnol Rep, DOI 10.1007/s11816-012-0241-4

Beauchemin N.J., Furnholm T., Lavenus J., Svistoonoff S., Doumas P., Bogusz D., Laplaze L., and Tisaa  L.S., 2012.  Casuarina Root Exudates Alter the Physiology, Surface Properties, and Plant Infectivity of Frankia sp. Strain CcI3. Appl. Environ. Microbiol., 78 (2) : 574-580.

Benelli C., De Carlo A., Engelmann F., 2012. Recent advances in the cryopreservation of shoot-derived germplasm of economically important fruit trees of Actinidia, Diospyros, Malus, Olea, Prunus, Pyrus and Vitis, Biotechnology Advance, doi: 10.1016/j.biotechadv.2012.09.004

Bertrand B., Boulanger R., Dussert S., Ribeyre F., Berthiot L., Descroix F., Joët T. , 2012. Climatic factors directly impact the volatile organic compound fingerprint in green Arabica coffee bean as well as coffee beverage quality. Food Chemistry, 135(4):2575-83.

Bocco R., Lorieux M., Seck P.A., et al., 2012. Agro-morphological characterization of a population of introgression lines derived from crosses between IR 64 (Oryza sativa indica) and TOG 5681 (Oryza glaberrima) for drought tolerance . Plant Science,   183 : 65-76   DOI: 10.1016/j.plantsci.2011.09.010 Published: FEB

Bobelé Niamké F., Amusant N., Stien D., Chaix G., Lozano Y., Kadio A.A., Lemenager N., Goh D., Amissa Adima A., Kati-Coulibaly S., Jay-Allemand C., 2012. 40,50-Dihydroxy-epiisocatalponol, a new naphthoquinone from Tectona grandis L. f. heartwood, and fungicidal activity. International Biodeterioration & Biodegradation, 74 : 93e98

Bocco R., Lorieux M., Seck P.A., Futakuchi K.,  Manneh B., Baimey H., Ndjiondjop M.N., 2012. Agro-morphological characterization of a population of introgression lines derived from crosses between IR 64 (Oryza sativa indica) and TOG 5681 (Oryza glaberrima) for drought tolerance . Plant Science183: 65-76

Bucher E., Reinders J., Mirouze M., 2012.  Epigenetic regulation of transposon expression and mobility in ArabidopsisCurrent Opinion in Plant Biology (online edition)

Campa C., Mondolot L., Rakotondravao A., Bidel L.P.R., Gargadennec A., Couturon E., La Fisca P., Rakotomalala J.J., Jay-Allemand C. and Davis A.P., 2012. A survey of mangiferin and hydroxycinnamic acid ester accumulation in coffee (Coffea) leaves: biological implications and uses. Annals of Botany, 110 (3) : 595-613

Carrier G., Le Cunff L., Dereeper A., Legrand D., Sabot F., Bouchez F., AudeguinL., Boursiquot J.M., This P., 2012. Transposable Elements Are a Major Cause of Somatic Polymorphism in Vitis vinifera L. Plos One,7 (3) : e32973

Cejas I., Vives K., Laudat T, Gonzalez-Olmedo J., Engelmann F., Edel Martınez-Montero M. and  Lorenzo J.C., 2012. Effects of cryopreservation of Phaseolus vulgaris L. seeds on early stages of germination. Plant Cell Re, 31 (11) : 2065-2073 : DOI 10.1007/s00299-012-1317-x

Chatrou L.W., Pirie M.D., Erkens R.H.J., Couvreur T.L.P., Neubig K.M., Abbott J.R., Mols J.B., Maas J.W., Saunders R.M.K. & Chase M.W., 2012. A new subfamilial and tribal classification of the pantropical flowering plant family Annonaceae informed by molecular phylogenetics. Botanical Journal of the Linnean Society, 169 : 5-40.

Clotault  J., Thuillet A.C., Buiron M., De Mita S., Couderc M.,  Haussmann B.I.G., Mariac C.  and Vigouroux Y., 2012. Evolutionary History of Pearl Millet (Pennisetum glaucum [L.] R. Br.) and Selection on Flowering Genes since Its Domestication . Molecular Biology and Evolution,29(4) : 1199-1212

Couvreur T.L.P.,, Maas P.J.M. Meinke S., Johnson D.M. & KeßLer P.J.A., 2012. Keys to the genera of Annonaceae. Botanical Journal of the Linnean Society169 : 74-83

De Smet, I., White, P., Bengough, G.A., Dupuy, L., Parizot, B., Casimiro, I., Heidstra, R., Laskowski, M., Lepetit, M., Hochholdinger, F., Draye, X., Broadley, M., Péret, B., Zhang, H., Hammond, J.P., Fukaki, H., Mooney, S., Lynch, J.P., Nacry, P., Schurr, U., Laplaze, L., Benfey, P., Beeckman, T. and Bennett, M., 2012. Analyzing lateral root development: how to move forward. The Plant Cell, 24 (1) : 15-20.

Dussert S., Couturon E., Engelmann F. et Joët T., 2012. Biologie de la conservation des semences de caféiers : aspects fondamentaux et conséquences pratiques. Une revue. Agriculture, 21 (2/3) : 69-216

Erkens R.H.J., Chatrou L.W. & Couvreur T.L P., 2012.  Radiations and key innovations in an early branching angiosperm lineage (Annonaceae; Magnoliales). Botanical Journal of the Linnean Society ,169 : 117-134.

Federici F., Dupuy L., Laplaze L., Heisler M., Haseloff J., 2012. Integrated genetic and computation methods for in planta cytometry. Nature Methods, 9 (5) : 483-U104.

Fki L., Bouazzizi N., Chikri O., Benjemaa--Masmoudi R.,  Rival A., Swennen R., Drira N. and Panis B., 2012. Cold hardening and sucrose treatment improve cryopreservation of date palm meristems. Biologia Plantarum, 20 (10): 30-30, 20XX

Grimanelli D., 2012. Epigenetic regulation of reproductive development and the emergence of apomixis in angiosperms. Current Opinion in Plant Biology, 15 (1) : 57-62.

Guiderdoni E., Gantet P., 2012. Ac-Ds solutions for rice insertion mutagenesis. Methods in Molecular Biology, Mobile Genetic Elements: Protocols and Genomic Applications, 859, (10) : 177-187.      Second edition, Springer Science, Yves Bigot (Ed.), DOI 10.1007/978-1-61779-603-6_10

Guyomarc’h S., Léran S. Auzon-Cape M., Perrine-Walker F., Lucas M., Laplaze L., 2012.  Early development and gravitropic response of lateral roots in Arabidopsis thaliana. Phil. Trans. Roy. Soc. B, 367   (1595)   Special Issue: SI  : 1509-1516.

Guyot R., Lefebvre-Pautigny F., Dubreuil-Tranchant C., Rigoreau M., Hamon P., Leroy T., Hamon S., Poncet V., Crouzillat D., de Kochko A., 2012. Ancestral Synteny Shared between Distantly-Related Plant Species from the Asterid (Coffea canephora and Solanum sp.) and Rosid (Vitis vinifera) Clades. BMC Genomics, 13:103

Ilina E.L.,  Logachov A.A., Laplaze L., DemchenkoN.P., Pawlowski K. and DemchenkoK.N., 20012. Composite Cucurbita pepo plants with transgenic roots as a tool to study root development . Annals of Botany, 10 (2) : 479-489

Joët T., Pot D., Dussert S., Marraccini P., 2012. Identification des déterminants moléculaires de la qualité du café par des approches de génomique fonctionnelle : une revue. Cahiers Agriculture, 21 (2-3) : 125-133.

Kim H.H, Popova E., Shin D.J, Yi J.Y, Kim C.H, Lee J.S., Yoon M.K. and Engelmann F., 2012. Cryobanking of korean Allium germaplasm collections: results from a 10 years experience.CryoLetters, 33 (1): 45-57

Kim  H., Popova E.V., Shin D.J., Bae C.H., Baek H.J., Park S.U. and Engelmann F., 2012. Development of a droplet vitrification  protocol for cryopreservation of Rubia akane (Nakai) hairy rootsusing a systematic approach.. CryoLetters 33 (6), 506-517

Kissling W.D., Eiserhardt W.L., Baker W.J., Borchsenius F., Couvreur T.L.P., Balslev H. & Svenning J.C., 2012. Cenozoic imprints on the phylogenetic structure of palm species assemblages worldwide. Proceedings of the National Academy of Sciences, 109 : 7379-7384.

Lepelley M., Mahesh V., McCarthy J., Rigoreau M., Crouzillat D., Chabrillange N., de Kochko A., Campa C., 2012. Characterization, high-resolution mapping and differential expression of three homologous PAL genes in Coffea canephora Pierre (Rubiaceae). Planta, 236: 313–326

Lertpanyasampatha M., Gao L., Kongsawadworakul P., Viboonjun U., Chrestin H., Liu R. Y., Chen X. M., Narangajavana J., 2012. Genome-wide analysis of microRNAs in rubber tree (Hevea brasiliensis L.) using high-throughput sequencing. Planta, 236 (2) : 437-445.

Lorieux M., 2012. MapDisto: fast and efficient computation of genetic linkage maps. Molecular Breeding 30:1231-1235

Lorieux M., Blein M., Lozano J., Bouniol M., Diévart A., Périn C., Mieulet D., Lanau N., Bès M., Droc G., Rouvière C., Gay C., Piffanelli P., Larmande P., Guérin V., Chalvon V., Michel C., Barnola I., Biderre-Petit C., Sallaud C., Perez P., Bourgis F., Ghesquière A., Gantet P., Tohme J., Morel J.B., Guiderdoni E., 2012. In-depth molecular and phenotypic characterization in a rice insertion line library facilitates gene identification through reverse and forward genetics approaches. Plant Biotechnology  Journal, 10  (5) : 555-568   DOI: 10.1111/j.1467-7652.2012.00689.x

Martinez-Montero M.E., Gonzalez Arnao M.T. and Engelmann F., 2012. Cryopreservation of Tropical Plant Germplasm with Vegetative Propagation - Review of Sugarcane (Saccharum spp.) and Pineapple (Ananas comosus (L.) Merrill) Cases. In: Current Frontiers in Cryopreservation, Igor I. Katkov (ed.) InTech – Open Access Publ., Rijeka, Croatia, pp. 359-396

Mirouze M., 2012. The Small RNA-Based Odyssey of Epigenetic Information in Plants: From Cells to Species. Journal of DNA and Cell Biology, 31(12):1650-6

N’Nan O., Borges M., Konan Konan J.L., Hocher V., Verdeil J.L.,Tregear  J., N’guetta A.S.P., Engelmann F. and Malaurie B., 2012. A simple protocol for cryopreservation of zygotic embryos of ten accessions of coconut (Cocos nucifera L.). In Vitro Cellular & Developmental Biomogy-Plant, 48  (2)  : 160-166

Péret B., Swarup K., Ferguson A., Seth M., Yang Y., Dhondt S.,James N.,Casimiro I., Perry P., Syed A.,Yang H., Reemmer J., Venison E.,Howells C.,Perez-Amador M.A.,Yun J.,Alonso J.,Beemster G.T.S., Laplaze L., Murphy A.,Bennett M.J.,Nielsen E. and Swarupa R., 2012. AUX/LAX genes encode a family of auxin influxtransporters that perform distinct functions during Arabidopsis development. The Plant Cell, 24: 2874–2885.

Poncet, V., Couderc M., Tranchant-Dubreuil C., Gomez C., Hamon P. et al., 2012. Microsatellite markers for Amborella (Amborellaceae), a monotypic genus endemic to New Caledonia. American Journal of Botany Primer Notes & Protocols in press.

Poulicard N., Galzi A., Traore O., Vignols F., Ghesquière A., Konate G., Hébrard E., Fargette D., 2012. Historical contingencies modulate the adaptability of Rice Yellow Mottle Virus. Plos Pathogens, 8 (1), p. e1002482.

Puig  J., Pauluzzi G., Guiderdoni E., Gantet P., 2012. Regulation of shoot and root development through mutual signaling. Molecular Plant, 5 (5) : 974-983.

Razafinarivo N.J., Rakotomalala J.J., Brown S.C., Bourge M., Hamon S., de Kochko A., Poncet V., Dubreuil-Tranchant C., Couturon E., Guyot R., Hamon P., 2012. Geographical gradients in the genome size variation of wild coffee trees (Coffea) native to Africa and Indian Ocean islands.Tree Genetics & Genomes, 8:1345–1358.

Razafinarivo N.J., Guyot R., Davis A.P., Couturon E., Hamon S., Crouzillat D., RigoreauI M., Dubreuil-Tranchant C., Poncet V., de Kochko A., Rakotomalala J.J. and Hamon P., 2012. Genetic diversity and evolutionary history of coffee (Coffea L.) across Africa and the Indian Ocean Islands revealed using microsatellites. Annals of Botany (in press)

Roongsattham P., Morcillo F., Jantasuriyarat C., Pizot M., Moussu S., Jayaweera D., Collin M., Gonzalez-Carranza Z.H., Amblard P., Tregear J.W., Tragoonrung S., Verdeil J.L., Tranbarger T.J., 2012. Temporal and spatial expression of polygalacturonase gene family members reveals complex regulation during fleshy fruit ripening and abscission in the monocot species oil palm. BMC Plant Biology 12:150.

Sané D., Aberlenc Bertossi F., Diatta L.I. D., Gueye B., Daher R A., Sagna M., Duval Y., Borgel A., 2012. Influence of growth regulators on callogenesis and somatic embryo development in date palm (Phoenix dactylifera L.) sahelian cultivars. Scientific World Journal : 837395.

Sanier C., Sayegh-Alhamdia M., Jalloul A., Clérivet A., Nicole M., Marmey P., 2012. A 13-lipoxygenase is expressed early in the hypersensitive reaction of cotton plants to Xanthomonas campestris pv. malvacearum. Journal of Phytopathology, 160 (6): 286-293.

Terral J.F., Newton C., Sarah I., Gros-Balthazard M., Tito de Morais C., Picq S., Tengberg M. and Pintaud J.C., 2012. Insights into the historical biogeography of the date palm (Phoenix dactylifera L.) using geometric morphometry of modern and ancient seeds.J. Biogeography39 (5) : 929-941   DOI: 10.1111/j.1365-2699.2011.02649.x

Tranbarger T.J., Kluabmongkol W., Sangsrakru D., Morcillo F., Tregear J.W., Tragoonrung S. and Billotte N., 2012. SSR markers in transcripts of genes linked to posttranscriptional and transcriptional regulatory functions during vegetative and reproductive development of Elaeis guineensis. BMC Plant Biology, 12: 1-12

Tromas A., Parizot B., Diagne N., Champion A., Hocher V., Cissoko M., Crabos A., Prodjinoto H., Lahouze B., Bogusz D., Laplaze L. and Svistoonoff S., 2012. Heart of endosymbioses: transcriptomics reveals a conserved genetic program among arbuscular mycorrhizal, actinorhizal and legume-rhizobial symbioses. PLosS One, 7: e44742.

 

Revues sans Comité de lecture

2012

Adéoti K., Dansi A., Ahoton L., Vodouhè R., Ahohuendo B.C., Rival A. and Sanni A., 2012. Agromorphological characterization of Sesamum radiatum (Schum. and Thonn.), a neglected and underutilized species of traditional leafy vegetable of great importance in Benin. African Journal of Agricultural Research, 7 (24) : 3569-3578

Jiang Q.B., Zhang Y., Zhong C.L., Zeng B.S., Bogusz D., Franche C., 2012. Establishment of an in vitro plant regeneration protocol for Casuarina cunninghamiana Miq. via indirect organogenesis. New Forests, 43 (2) : 143-154.

Ndjiondjiop, M. N., Seck, P. A., Lorieux, M., Futakuchi, K., Yao, K. N., Djedatin, G., Sow, M., et al.. 2012. Effect of Drought on Oryza glaberrima Rice Accessions and Oryza glaberrima Derived-lines. Asian Journal of Agricultural Research in press.

Yi J. Y., Sylvestre I., Colin M., Salma M., Lee S. Y., Kim H. H., Park H. J., Engelmann F., 2012. Improved cryopreservation using droplet-vitrification and histological changes associated with cryopreservation of madder (Rubia akane nakai). Korean Journal of Horticultural Science and Technology,  30 (1) : 79-84. 

 

2011

Adéoti K., Rival A., Dansi A., Ahohuendo B.C, Santoni S., Beule T., Nato A., Henry Y., Ahanchédé A., Vodouhè R., Hounhouigan D.J. and Sanni A., 2011. Assessment of genetic diversity among accessions of two traditional leafy vegetables (Acmella uliginosa (L.) and Justicia tenella (Nees) T.) consumed in Benin using amplified fragment length polymorphism (AFLP) markers. African Journal of Biotechnology, Vol. 10 (15) : 2811-2819

Adéoti K. , Rival A., Dansi A., Santoni S., Brown S., Beule T., Nato A., Henry Y., Vodouhe R., Loko L. Y. and Sanni A., 2011. Genetic characterization of two traditional leafy vegetables (Sesamum radiatum Thonn. ex Hornem and Ceratotheca sesamoides Endl.) of Benin, using flow cytometry and amplified fragment length polymorphism (AFLP) markers. African Journal of Biotechnology, 10 (65) : 14264-14275

Castaño F., Crèvecoeur M., Pintaud J.-C ., Stauffer F.W. 2011. Floral structure in the Neotropical palms Cheliocarpus Dammer, Cryosophila Blume and Itaya H.E. Moore (Arecaceae). Candollea 66 : 65-79.

Dubreuil-Tranchant C ., Guyot R. , Guellim A., Duret C., de la Mare M., Razafinarivo N., Poncet V., Hamon S., Hamon P . and de Kochko A ., 2011. Site-Specific Insertion Polymorphism of the MITE Alex-1 in the Genus Coffea Suggests Interspecific Gene Flow. International Journal of Evolutionary Biology , Volume 2011 , Article ID 358412, 9 pages doi:10.4061/2011/358412

Engelmann F ., 2011. Use of biotechnologies for the conservation of plant biodiversity. In Vitro Cell.Dev.Biol.-Plant 47: 5-16

Gonzalez-Arnao M.T., Mascorro-Gallardo J.O., Osorio Saenz A., del Rocio M., Valle-Sandoval & Engelmann F .. 2011. Improvements in tolerance to cryopreservation using shoot-tips of chrysanthemum (Dandranthema grandiflorum Kitam.) from genetically modified plants that accumulate trehalose. In: Cryogenics: Theory, Processes; A.E. Hayes (ed.), Nova Sci. Publ., New York :137-148.

Rival A.and Jaligot E ., 2011. Epigenetics and plant breeding. CAB Reviews: Perspectives in Agriculture, Veterinary Science, Nutrition and Natural Resources , 6 , (048 )

Vigouroux Y. , Barnaud A. , Scarcelli N. , Thuillet A.-C. , 2011. Biodiversity, evolution and adaptation of cultivated crops. Comptes Rendus Biologies , 334 (5-6) : 450-457.

 

2010

Bandupriya H.D., Fernando S.C., Verdeil J.L., Malaurie B. , 2010. Cryopreservation of encapsulated plumules of coconut: effect of transport/store conditions. AsPac J. Mol. Biol. Biotechnol. 18 : 135-137

Bobelé F. N., Amusant N., Charpentier J.P., Chaix G., Baissac Y. , Boutahar N., Amissa Adima A., Kati-Coulibaly Séraphin, Jay-Allemand C. , (2010). Non-structural carbohydrates and phenolics are related to wood natural durability in teak (Tectona grandis ). Annals of Forest Science, (in press)

Chaix G., Vigneron P., Razafimaharo V., Hamon S. , (2010). Improved management of Malagasy Eucalyptus grandis seed orchards using microsatellites and paternity assignment. Journal of Tropical Forest Science , 22 (3 ) : 271-280

Chantereau J., Deu M., Pham J.L. , Kapran I., Vigouroux Y., Bezançon G. , 2010. Evolution des diversités phénotypique et génétique des sorghos et mils cultivés au Niger de 1976 à 2003. "Le Sélectionneur Français", ( 61 ) : 33 - 45

Chonglu Z., Yong Z., Yu C., Zhen C., Qingbin J., Pinyopusarerk K., Franche C. , 2010. Potential Casuarina species and suitable techniques for the GGW. In : Dia A. (ed.) , Duponnois Robin (ed.), Wade A. (préf.). Le projet majeur africain de la Grande Muraille Verte : concepts et mise en oeuvre. Marseille : IRD : 161-168.

Hocher V., Gherbi H., Svistoonoff S., Diagne N., Vayssaire V., Auguy F., Bonneau J., Laplaze L., Doumas P., Bogusz D., Franche C., 2010. Les arbres actinorhiziens de la famille des Casuarinaceae : utilisations et étude de la plasticité racinaire face aux contraintes abiotiques. In : Dia A. (ed.) , Duponnois Robin (ed.). Le projet majeur africain de la Grande Muraille Verte : concepts et mise en oeuvre . Marseille : IRD , 71-76.

Kuswanhadi, Leclercq J., Rio M., Tregear J. , Ducamp-Collin M.N., Montor P., 2010. Isolation of three members of the multigene family encoding ACC oxidases in Hevea brasiliensis and investigation of their responses to ethylene stimulation and wounding. Journal of Rubber Research , 13 (3) : 185-205

Montufar R., Laffargue A. Pintaud J.C., Hamon S. , Avallone S., Dussert S. , 2010. "Oenocarpus bataua Mart. (Arecaceae ) : rediscovering a source of high oleic vegetable oil from Amazonia." Journal of the American Oil Chemists Society , 87 (2) : 167-172.

Perera, P.I.P., Yakandawala D.M.D. Verdeil J. L., Hocher V. , Weerakoon L. K., (2010). "Morphological aspects of coconut anther culture derived structures." Journal of the National Science Foundation of Sri Lanka, 38 (1) : 69-74.

Perera P.I.P., Hocher V., Weerakoon L.K., Yakandawala D.M.D., Fernando S.C., Verdeil J.L., 2010. Early inflorescence and floral development in Cocos nucifera L . (Arecaceae : Arecoideae ). South African Journal of Botany, 76 (3) : 482-492

Rival A. , Sanni A., Nato A., Henry Y., 2010. Sudbiotech: A training initiative in Plant Biotechnology dedicated to scientific communities in developing and emerging countries. Not. Bot. Hort. Agrobot. Cluj., 38 (2) : 16-21.

Rival A., and Jaligot E ., 2010. Oil Palm Biotechnologies Are Definitely Out of Infancy. Oleagineux, Corps gras, Lipides, (in press).

Sisunandar, Samosir Y., Rival A. , Adkins S.W., 2010. Fidelity of Coconut (Cocos nucifera L.) seedlings recovered from cryopreservation: Phenotypic, cytogenetic and molecular assessments. Planta,

Smouni A., Ater M. Auguy F., Laplaze L. , El Mzibri M., Berhada F., Filali-Maltouf A., Doumas P. 2010. "Evaluation de la contamination par les éléments-traces métalliques dans une zone minière du Maroc oriental = Assessment of contamination by metallic trace elements in a mining area of eastern Morocco." Cahiers Agricultures, 19 (4) : 273-279.

 

2009

Bezançon G., Pham J.L. , Deu M., Vigouroux Y. , Sagnard F., Mariac C. , Kapran I., Mamadou A., Gérard B., Ndjeunga J., Chantereau J., 2009. "Changes in the diversity and geographic distribution of cultivated millet (Pennisetum glaucum (L. ) R. Br.) and sorghum (Sorghum bicolor (L. ) Moench) varieties in Niger between 1976 and 2003." Genetic Resources and Crop Evolution, 56 (2) : 223-236.

Borges Garcia M., Alarcon Sanchez Y., Malaurie B. , Hernandez Jerez Y., Silva Pupo J.J., 2009. Conservacion in vitro de Dioscorea alata L . clon caraqueno (Dioscoreaceae ). Revista Peruana de Biología , 16 (2) : 203-208.

Dulloo M.E., Ebert A.W., Dussert S. , Gotor E., Astorga C., Vasquez N., Rakotomalala J.J., Rabemiafara A., Eira M.T., Bellachew B., Omondi C., Engelmann F. , Anthony F., Watts J., Snook L., 2009. Cost efficiency of cryopreservation as a long term conservation method for coffee genetic resources. Crop Science, 49 (6) : 2123-2138.

Edil Estrada Abeal, Misterbino Borges Garcia, L.M. Gonzales Nunez, Hernandez Jerez Y., Kosky R.G., Malaurie B ., 2009. Aplicación de algunas técnicas de estadística multivariada al estudio de la conservación in vitro de germoplasma de Dioscorea alata L. Biotecnología Vegetal Vol. 9, No. 3 : 153 – 159.

Engelmann F. , 2009. "Biotechnologies et conservation des ressources phytogénétiques = Biotechnologies and conservation of phytogenetic resources." Cahiers Agricultures, 18 (6) : 481-485.

Franche C. , Lindstrom K. et al., 2009. "Nitrogen-fixing bacteria associated with leguminous and non-leguminous plants." Plant and Soil, 321 (1-2) : 35-59.

Gherbi H. and Bogusz D. , 2009. "Root endosymbiosis: multiple interactions but common genetic mechanism." Biofutur, (298 ) : 34-38.

Gonzalez-Arnao M.T., Lazaro-Vallejo C.E., Engelmann F. , Gamez-Pastrana R., Martinez-Ocampo Y.M., Pastelin-Solano M.C., Diaz-Ramos C., 2009. Multiplication and cryopreservation of vanilla (Vanilla planifolia 'Andrews'). In Vitro Cellular and Developmental Biology-Plant , 45 (5) : 574-582

Hocher V., Auguy F., Bogusz D., Doumas P., Franche C., Gherbi H., Laplaze L. , Obertello M., Svistoonoff S. , 2009. Les symbioses actinorhiziennes fixatrices d’azote : un exemple d’adaptation aux contraintes abiotiques du sol = Actinorhizal nitrogen fixing symbiosis : an example of adaptation against soil abiotic stresses. Cahiers Agricultures , 18 (6 ) : 498-505

Jiang Q.B., Zhong C.L., Zhang Y., Huang G.H., Franche C. , 2009. The progress of symbiotic genetic transformation in Casuarinaceae . Jour. Trop. and Subtrop. Bot. , 17 (2) , : 205-210

Monteuuis O., Baurens F.C. Goh D. K. S., Quimado M., Doulbeau S. , Verdeil J., 2009. "DNA methylation in Acacia mangium in vitro and ex-vitro buds, in relation to their within-shoot position, age and leaf morphology of the shoots." Silvae Genetica, 58 (5-6 ) : 287-292.

Rival A., Jaligot E., Beulé T., Tregear J. & Finnegan E.J., 2009. The oil palm “mantled” somaclonal variation: a model for epigenetic studies in higher plants. Acta Horticulturae , 829 : 177-182. 

 

Chapitres d'ouvrages et Proceedings

2012

Barraco G., Sylvestre I. & Engelmann F.. 2012. Cryopreservation of sugarcane (Saccharum sp.) shoot tips using encapsulation-dehydration and droplet-vitrification. In : A. Grapin, E.R.J. Keller, P.T. Lynch, B. Panis, A. Revilla Bahillo & F. Engelmann (eds.), Cryopreservation of crop species in Europe Proceedings of the final meeting, Agrocampus Ouest INPH, Angers, France, 8-11 Feb. 2011, COST Office, Brussels, pp. 119-122.

Benabdoun M., Djekoun A., Ykhlef N., Gherbi H., Bogusz D. et Franche C., 2012. La symbiose actinorhizienne Casuarina-Frankia. Revue Science et Technologie de l’Université de Constantine, 35 : 1-5.

Bogusz, D. and Franche, C. 2012. Signaling and communication in the actinorhizal symbiosis. In : Symbiosis, evolution and ecological effects. Nova Science Publishers, sous presse.

Diagne, N., Diouf,D., Svistoonoff,S.,  Kane, A., Noba,K., Laplaze, L., Franche, C.,  Bogusz,D. and Duponnois, R. 2012. Arbuscular and ectomycorrhiza fungi: useful biological tool to promote establishment of exotic trees in arid and semi-arid African areas. Nova Science Publishers, p 215-234.

Hocher,V., Alloisio,N., Laplaze,L., Bogusz,D. and Normand,P. 2011. Genomics of the root-actinorhizal symbiosis. In : M. Crespi (ed). Roots and their soil interactions: What we can learn from genomics? Wiley-Blackwell, sous presse.

Lavenus, J., Lucas, M., Laplaze L. and Guyomarc’h, S.2012. The dicot root as a model system for studying organogenesis. In: De Smet (ed), Plant Organogenesis. Methods in Molecular Biology, I. Wiley-Blackwell, sous Presse.

Wahbi, S., Franche, C., Dommergue, O., Hafidi, M.,  Galiana, A., Baudoin, E., Sanguin, H., Prin, Y. and Duponnois, R. 2012. Gestion des microorganismes symbiotiques pour une restauration durable de la productivité des sols tropicaux et méditerranéens. Dans : Roose, E. (Ed.), La restauration de la productivité des sols tropicaux et méditerranéens, IRD Editions, sous presse. 

 

2011

Balasubramanian A., Venkatachalam R., Selvakesavan R., Abraham S., Gherbi H ., Svistoonoff S., Franche C ., Bogusz D . and Nambiar-Veetil, M., 2011. Optimisation of methods for Agrobacterium rhizogenes mediated generation of composite plants in Eucalyptus camaldulensis . BMC Proceedings , 5 (Suppl 7) : 45-46

Benabdoun F.M, Nambiar-Veetil M., Imanishi L., Svistoonoff S., Ykhlef N., Gherbi H ., and Franche C., 2011. Composite Actinorhizal Plants with Transgenic Roots for the Study of Symbiotic Associations with Frankia . Hindawi Publishing Corporation Journal of Botany Volume 2011 , Article ID 702947, 8 pages doi:10.1155/2011/702947

Chatrou, L. W., Wieringa, J. J. & Couvreur, T. L. P., 2011. The impact of climate change on the origin and future of East African rain forest trees. In Climate change and systematics (ed. T. Hodkinson, M. Jones, J. Parnell, S. N. Sheoin & S. Waldren) , pp. 304-319. Dublin: Cambridge University Press.

Damiano C., Caboni E., Frattarelli A., Condelo E., Arias A. & Engelmann F. , 2011. Cryopreservation of fruit tree species through encapsulation-dehydration at the CRA – Fruit research Centre of Rome. In: Proceedings of the First International Symposium on Cryopreservation in Horticultural Species, Leuven, Belgium, 5-8 April 2009, Acta Hortic. 908 :187-190.

Engelmann F. , 2011. Encapsulation-dehydration for cryopreservation: past, present and future. Proceedings of the First International Symposium on Cryopreservation in Horticultural Species, Leuven, Belgium, 5-8 April 2009, Acta Hortic . 908 : 165-171.

Engelmann F., 2011. Germplasm collection, storage, and conservation. In: Arie Altman and Paul Michael Hasegawa, editors, Plant Biotechnology and Agriculture. Oxford: Academic Press, 255-268.

Engelmann F ., 2011. Cryopreservation of zygotic embryos: an overview. In: Plant Embryo Culture: Methods and Protocols, T. Thorpe & E. Yeung (eds.) Methods in Molecular Biology Series. Humana Press, Totowa, NJ. : 155-184

Engelmann F., Malaurie B. & N’Nan O., 2011. In vitro culture of coconut zygotic embryos. In: Plant Embryo Culture: Methods and Protocols, T. Thorpe & E. Yeung (eds.) Methods in Molecular Biology Series. Humana Press, Totowa, NJ .: 63-74

Franche C ., 2011. Les OGMs sont-ils une solution pour nourrir les habitants de la planète ? In: Guizard, P. (ed). Questions ouvertes - Les développements durables. CNDP-CRDP , 48-51.

Franche C., Gherbi H., Benabdoun M., Svistoonoff S., Hocher V., Bogusz D ., 2011. New insights in the molecular events underlying actinorhizal nodulation in the tropical tree Casuarina glauca. Franche et al. BMC Proceedings , 5 (Suppl 7): O33 http://www.biomedcentral.com/1753-6561/5/S7/O33

Gamez-Pastrana R., González-Arnao M.T., Engelman F. and Martinez-Ocampo, 2011. Thermal event in Calcium alginate beads during encapsulation dehydration and encapsulation-vitrification ptotocols. Proc. First IS on Cryopreservation in Hort. Species, Acta. Hort. 908

Gherbi H., Benabdoun M., Svistoonoff S., Hocher V., Bogusz D. and Franche C ., 2011. New insights in the molecular events underlying actinorhizal nodulation in the tropical tree Casuarina glauca. BMC Proceedings , 5 (sup. 7): 33-34.

González-Arnao M.T. & Engelmann F. , 2011. Current development and application of plant cryopreservation in Latin America and the Caribbean. In: Proceedings of the First International Symposium on Cryopreservation in Horticultural Species, Leuven, Belgium, 5-8 April 2009, Acta Hortic. 908 : 447-451.

Gonzalez-Arnao M.T., Mascorro-Gallardo J.O., Osorio Saenz A., del Rocio M., Valle-Sandoval & Engelmann F ., 2011. Improvements in tolerance to cryopreservation using shoot-tips of chrysanthemum (Dandranthema grandiflorum Kitam.) from genetically modified plants that accumulate trehalose. In: Cryogenics: Theory, Processes; A.E. Hayes (ed.), Nova Sci. Publ., New York : 137-148

Imanishi L., Vayssières A., Franche C., Bogusz D., Wall L., and Svistoonoff S., 2011. Transformed Hairy Roots of the actinorhizal shrub Discaria trinervis : a valuable tool for studying actinorhizal symbiosis in the context of intercellular infection. BMC Proceedings , 5 (Suppl 7) : P85

Kim H.H., Lee Y.G., Shin D.J., Ko H.C., Gwag J.G., Cho E.G.i, Engelmann F. , 2011. Development of alternative plant vitrification solutions in droplet vitrification procedures. In: Proceedings of the First International Symposium on Cryopreservation in Horticultural Species, Leuven, Belgium, 5-8 April 2009, Acta Hortic. 908 : 181-186.

Kim H.H., Popova E., No N.Y., Baek H.J., Kim C.K., Cho E.G. and Engelman F ., 2011. Application of alternative loading solutions to garlic and Chysanthemum in droplet-vitrification procedures. Acta Hort ., 908

Kim H.H., Shin D.J., No N.Y., Yoon M.K., Choi H.S., Lee J.S., Engelmann F. , 2011. Cryopreservation of garlic germplasm collections using the droplet-vitrification technique. In: Proceedings of the First International Symposium on Cryopreservation in Horticultural Species, Leuven, Belgium, 5-8 April 2009, Acta Hortic. 908 : 173-180.

Leblanc O, Grimanelli D, Singh M., 2011. Gamete encounter in maize. In J.L. Prioul, C. Thévenot and T. Molnar (eds). Advances in Maize (Essential Reviews in Experimental Biology) (Vol.3) , Society for Experimental Biology, UK. .

Malaurie B ., N’Nan O., Bandupriya H.D.D., Verdeil J.C., Tregear J., 2011. Cryopreservation as a Tool for the Management of Coconut Germplasm. In, Proceeding First IS on Cryopreservation in Hort. Species, B. Panis & P. Lynch (eds.), Acta Hort. , 908 , 461-466.

Nambiar-Veetil M., Nair D.N., Selvakesavan RK., Jayaraj R.S.C., Roopesh M., Prabhu S.J., Balasubramanian A., Venkatachalam R., Sowmiyarani K.S., Sudha S., Bachpai V.W., Franche C., Gherbi H., Svistoonoff S., Hocher V., Bogusz D . and Vivekanandan R., 2011. Development of an in silico gene bank for plant abiotic stresses; towards its utilization for molecular analysis of salt tolerant and susceptible Casuarina equisetifolia clones.

Pence V.C. & Engelmann F ., 2011. Collecting in vitro for genetic resources conservation. Chapter 24 in: Guarino L, Ramanatha Rao V, Goldberg E. 2011. Collecting Plant Genetic Diversity: Technical Guidelines. 2011 update. Bioversity International, Rome.

Robert T., Khalfallah N., Martel E., Lamy F., Poncet V., Allinne C., Remigereau M.S., Rekima S., Leveugle M., Lakis G., Siljak-Yakovlev S. & Sarr A., 2011. Pennisetum . In Wild Crop Relatives: Genomic and Breeding Resources (ed. C. Kole). Springer Berlin Heidelberg.

Sy M. et Franche C., 2011. L’apport des biotechnologies végétales aux pays en développement. In: Ricroch, A., Dattée, Y., Fellous, M. (eds.) Biotechnologies végétales: Environnement, alimentation, santé ». AFBV , 185-197.

Yin Z., Feng C., Wang B., Engelmann F. , 2011. Cryotherapy of shoot tips: a new emerging technique for efficient elimination of plant pathogens. Acta Hort., 908

Zhong C., Jiang Q., Zhang Y., Nambiar-Veetil M., Vaissayre V., Bogusz D. and Franche C., 2011. Genetic transformation of Casuarina equisetifolia by Agrobacterium tumefaciens

Zhong C., Zhang Y., Chen Y., Jiang Q., Chen Z., Wu C., Pinyopusarerk K., Franche C. and Bogusz D., 2011. Casuarina research and development in China.

 

2010

Bidel, L. P. R ., Coumans, M., Baissac, Y., Doumas, P., Jay-Allemand, C. , 2010. Biological activity of phenolics in plant cells. InWiley-Blackwell publishing, Eds C. Santos-Buelga, M.T. Escribano-Bailon and V. Lattenzio (Ed.), Recent Advances in Polyphenol Research , vol II : 163-205.

Blervacq A-S. , Lucau-Danila A. , Couillerot J-P. , Morcillo F. , Aberlenc-Bertossi F. , Hawkins S. , Tranbarger T.J. , Verdeil J.L., 2010. Stem cell-like cells and plant regeneration. In: Advances in Medicine and Biology . Volume 15 . Novapublishers . 2010. ISBN:978-1-61122-467-2

Jaligot E., Ilbert P. & Rival A. , 2010. Étude et maîtrise des variants somaclonaux chez le palmier à huile. In : Biotechnologies du palmier dattier , pp187-194. Frédérique Aberlenc-Bertossi (ed.), IRD Editions, Marseille, France.

Svistoonoff S., Gherbi H., Nambiar-Veetil M., Zhong C., Michalak Z., Laplaze L. , Vaissayre V., Auguy F., Hocher V., Doumas P., Bonneau J., Bogusz D. & Franche C. , 2010. Contribution of transgenic Casuarinaceae to our knowledge of the actinorhizal symbioses. Symbiosis, 50 : 3-11, Volume 50 , Combined 1-2 

 

Ouvrages

2012

Grapin A., Keller E.R.J., Lynch P.T., Panis B., Revilla Bahillo A. & Engelmann F., (eds.), 2012. Cryopreservation of crop species in Europe. Proceedings of the final meeting, Agrocampus Ouest INPH, Angers, France, 8-11 Feb. 2011, COST Office, Brussel

 

2011

Tregear J., 2011. The anatomy of palms (Arecaceae–Palmae) AOBPreview published on October 12, 2011 Ann Bot 2011 108 : 1539; doi:10.1093/aob/mcr265

Zhong C., Pinyopusarek K., Franche, C . and Kalingare A., 2011. Improving smallholder livehoods through improved Casuarina productivity. China Forestry Publishing House, Beijing, sous presse.

 

2010

Aberlenc-Bertossi F . , 2010. Biotechnologies du palmier dattier. IRD Editions, coll. Colloques et seminaires , 262 p.